Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2476g00017 ATGTCTGACGTGGAAGAGTTTCGTTGCTTCATTGGCGGCCTTTCATGGTCAACATCTGATAGAAAGTTAAAGGATACTTTTGATAAGTTTGGCAAGCTTCTTGAGGCAAAGGTGGTTGTTGACAAATTCTCTGGGCGCTCTCGCGGTTTTGGGTTTGTCACATTTGATGACAAGAAAGCAATGGATGAGGCTATTGAGGCTATGAATGGAATGGATTTGGATGGTCGAACTATTACTGTTGATAAAGCTCAGCCTCAACAAGGATCATCTAGAGATGATGGTGATCGCCCTCGAGAACGTGGTCGTGATCGCGATCGCGATCGTAATCGAGATTATGGAGGTGGTCGAGGATCTAATGGTGGGGAATGCTTTAAGTGTGGTAAACCTGGTCATTTTGCAAGAGAATGTCCTAGTGAAGGAGCAAGAGGGGGAAGGTATGGTGGCAGAGAAAGTAGATACAGTGGTGGAAATGGTGGTGGTCACTATGGTCCTGATAGGAATGCAGATCGTTCTTCTGGTGGGCGGAACAGGGATGGTGGTAGTCATGGAGATTCTGGAAATGATCGATATTATCGTGATCGTGATCGTGCTGGGCCTTATGAGCGGCGGGGATCTGGAGGATTTCGTTGA 630 0.4683 MSDVEEFRCFIGGLSWSTSDRKLKDTFDKFGKLLEAKVVVDKFSGRSRGFGFVTFDDKKAMDEAIEAMNGMDLDGRTITVDKAQPQQGSSRDDGDRPRERGRDRDRDRNRDYGGGRGSNGGECFKCGKPGHFARECPSEGARGGRYGGRESRYSGGNGGGHYGPDRNADRSSGGRNRDGGSHGDSGNDRYYRDRDRAGPYERRGSGGFR 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2476g00017 209 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Gabi2476g00017 209 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Gabi2476g00017 209 CDD RRM2_NsCP33_like 8 83 - -
Gabi2476g00017 209 ProSiteProfiles Zinc finger CCHC-type profile. 123 138 IPR001878 GO:0003676|GO:0008270
Gabi2476g00017 209 SUPERFAMILY RNA-binding domain, RBD 4 117 IPR035979 GO:0003676
Gabi2476g00017 209 Gene3D - 119 177 - -
Gabi2476g00017 209 MobiDBLite consensus disorder prediction 88 113 - -
Gabi2476g00017 209 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 206 - -
Gabi2476g00017 209 Pfam Zinc knuckle 122 138 IPR001878 GO:0003676|GO:0008270
Gabi2476g00017 209 FunFam Glycine-rich RNA-binding protein RZ1A 1 118 - -
Gabi2476g00017 209 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Gabi2476g00017 209 FunFam Glycine-rich RNA-binding protein 10 119 177 - -
Gabi2476g00017 209 Gene3D - 2 118 IPR012677 -
Gabi2476g00017 209 SMART rrm1_1 8 81 IPR000504 GO:0003723
Gabi2476g00017 209 SUPERFAMILY Retrovirus zinc finger-like domains 114 140 IPR036875 GO:0003676|GO:0008270
Gabi2476g00017 209 MobiDBLite consensus disorder prediction 75 209 - -
Gabi2476g00017 209 MobiDBLite consensus disorder prediction 168 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2476g00017 Gabi-Chr2476 151794 155512 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2476g00017 9 84 Eukaryotic Initiation Factors Gene Family AT1G22760 31.579 1.20e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2476g00017 - - gmx:100815224 292.737