Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2476g00011 ATGGTTGGAAGTGTTGATGTAGCTGACGATTTGAGCATCAATGGAGCAGTGGAACCATTGCCCGAGGACTTTGATGCGACAGCCATCATCAAAGATCCTGTGCCTCCTGTAATTGCTGAGAATGGCATTGTCAAGGAGGAGGATCAGATCGGTAAGGGAAAAGAAAAAAGAGATATAGTACTGGGAAGAAATATTCATACCATGTGTCTAGAAGTCACAGAACCTGATGCAGATGATGAGGTTACTGGGGAACGGGAAGCTTATATGGCAAGCGTGTTGTCCAAATACAAAAGAGCTTTGACTGAAAGGACAAAGCATCATTTAGGCTACCCCTATAATTTGGATTTTGACTATGGTGCACTCAATCAACTTCAGCACTTTTCCATAAACAACCTGGGAGATCCATTTATTGAAAGCAATTATGGTGTCCACTCCCGGCAGTTTGAAGTTGGTGTTTTGGATTGGTTTGCCCGATTGTGGGAACTGGAGAAAAATGAGTACTGGGGCTATATCACAAATTGTGGGACAGAAGGCAATCTCCATGGCATCCTTGTTGGAAGAGAGGTCCTGCCAGATGGGATTTTGTATGCCTCACGGGAGTCACATTATTCCATTTTTAAAGCTGCTCGCATGTACAGAATGGAATGTGTGAAGGTTGAGACTCTTTGTTCTGGGGAGATTGATTGTGATGACTTCAAGGCCAAGCTTCTCTGTCACCAGGACAAGCCAGCAATTATAAATGTGAACATAGGTACAACTGTGAAAGGAGCTGTGGATGACCTTGATCTGGTCATTAAGAAACTTGAAGAAGCTGGATTTTCGCATGACAGGTTCTACATCCATTGTGATGGGGCTTTGTTTGGTCTGATGATGCCTTTCGTGAAACGCGCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGCGTTTCTGGCCACAAATTCGTGGGGTGTCCAATGCCTTGTGGTGTGCAGATAACAAGATTGGAGTATGTTAATGCTCTTTCCAGGAATGTAGAATACCTTGCTTCTAGAGATGCCACAATCATGGGTAGCCGGAATGGCCATGCTCCCATATTCCTTTGGTATACCTTAAACCGGAAAGGATACAGAGGTTTTCAGAAAGAAGTACAAAAATGCTTGCGTAATGCACACTACTTCAAAGACCGCCTTGTTGAGGCCGGGATTGGTGCAATGCTAAATGAGCTGAGCAGTACGGTTGTGTTTGAGCGGCCACATGATGAGGAATTTGTACGCAAGTGGCAGTTGGCATGCAAGGGAAACATCGCACATGTGGTGGTGATGCCAAACATCACTATTGAGAAGCTTGATGATTTTCTGAACGAGCTTATGCAGAAGCGTGCTGCCTGGTTTCAGGATGGGAAGTTGCAACCTCATTGTATTGCATCGGATGTAGGTGAAATAAATTGCCTTTGTGCTTTGCATAAGTAA 1455 0.4419 MVGSVDVADDLSINGAVEPLPEDFDATAIIKDPVPPVIAENGIVKEEDQIGKGKEKRDIVLGRNIHTMCLEVTEPDADDEVTGEREAYMASVLSKYKRALTERTKHHLGYPYNLDFDYGALNQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKNEYWGYITNCGTEGNLHGILVGREVLPDGILYASRESHYSIFKAARMYRMECVKVETLCSGEIDCDDFKAKLLCHQDKPAIINVNIGTTVKGAVDDLDLVIKKLEEAGFSHDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRLEYVNALSRNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYFKDRLVEAGIGAMLNELSSTVVFERPHDEEFVRKWQLACKGNIAHVVVMPNITIEKLDDFLNELMQKRAAWFQDGKLQPHCIASDVGEINCLCALHK 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2476g00011 484 FunFam Serine decarboxylase 1 123 366 - -
Gabi2476g00011 484 Gene3D - 122 366 IPR015421 GO:0003824
Gabi2476g00011 484 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 308 329 IPR021115 GO:0016831
Gabi2476g00011 484 Pfam Pyridoxal-dependent decarboxylase conserved domain 194 405 IPR002129 GO:0016830|GO:0019752|GO:0030170
Gabi2476g00011 484 Gene3D Aspartate Aminotransferase, domain 1 367 455 IPR015422 GO:0003824
Gabi2476g00011 484 SUPERFAMILY PLP-dependent transferases 103 453 IPR015424 -
Gabi2476g00011 484 PANTHER - 48 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2476g00011 Gabi-Chr2476 115122 120104 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2476g00011 207 390 Calmodulin-binding Proteins AT1G65960 26.943 7.71e-10 58.5