Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2470g00002 ATGGCTTCTTCAGGTGGAATCAACACGACAACGGGTGTGGGTGTGGAATGGCACGTGCGTCCTCAAAACCCTAAGAACCCCATCGTCTTCTTCGATGTCACCATCGGTAACATACCAGCTGGTAGAATCAAGATGGAACTCTTTGCTGATATTGCCCCCAAAACCGCCGAGAATTTCAGGCAGCTCTGCACAGGAGAGTACAGGAAAGCGGGACTGCCTGTTGGTTATAAGGGTTGTCAATTTCATAGGGTGATTAAGGATTTTATGATTCAGGCTGGTGATTTTGTAAAGGGTGATGGTAGTGGATGTGTTTCCATTTATGGACTCAAGTTTGATGATGAAAATTTTATTGCCAAACACACTGGCCCTGGTCTTCTCTCAATGGCAAATAGCGGACAAAATACCAATGGTTGTCAGTTCTTTATAACTTGTGCAAAATGCGATTGGCTTGACAACAAGCATGTCGTTTTTGGGAGAGTGCTTGGAGATGGTCTTTTGGTTGTGAGGAAGATTGAGAATGTTGCAACTGGACCCAATAACCGGCCAAAATTAGCTTGCGTCATTGCTGAATGCGGTGAAATGTAA 585 0.4462 MASSGGINTTTGVGVEWHVRPQNPKNPIVFFDVTIGNIPAGRIKMELFADIAPKTAENFRQLCTGEYRKAGLPVGYKGCQFHRVIKDFMIQAGDFVKGDGSGCVSIYGLKFDDENFIAKHTGPGLLSMANSGQNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVIAECGEM 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2470g00002 194 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 30 193 IPR002130 GO:0000413|GO:0003755
Gabi2470g00002 194 FunFam Peptidyl-prolyl cis-trans isomerase 16 194 - -
Gabi2470g00002 194 SUPERFAMILY Cyclophilin-like 17 194 IPR029000 -
Gabi2470g00002 194 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 29 194 - -
Gabi2470g00002 194 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 76 93 IPR020892 GO:0003755|GO:0006457
Gabi2470g00002 194 Gene3D - 15 194 IPR029000 -
Gabi2470g00002 194 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 31 192 IPR002130 GO:0000413|GO:0003755
Gabi2470g00002 194 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 139 151 IPR002130 GO:0000413|GO:0003755
Gabi2470g00002 194 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 152 167 IPR002130 GO:0000413|GO:0003755
Gabi2470g00002 194 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 47 62 IPR002130 GO:0000413|GO:0003755
Gabi2470g00002 194 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 81 93 IPR002130 GO:0000413|GO:0003755
Gabi2470g00002 194 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 124 139 IPR002130 GO:0000413|GO:0003755
Gabi2470g00002 194 CDD cyclophilin_ABH_like 27 192 - -
Gabi2470g00002 194 PIRSF Peptidylpro_ismrse 12 194 IPR024936 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2470g00002 Gabi-Chr2470 20017 26399 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2470g00002 22 192 U-box Gene Family AT5G67530 42.197 1.23e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2470g00002 K09567 - gmx:100813835 384.8