Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi246g00001 ATGATTACTGAGAAAACTCAGCTAGTTGTACAGAACCTTTTTGTGAACAAGATAAAGAAACGATTCCAAAGTGATGAGCATGTTTACAAATCGTTCTTGAACATTTCCAATATGTACCGCAAAGAGCATAAGGACATAGGTGAAATTTATAGTGAGGTTGCTACCCTGTTTAAGGATCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATAGTTTCGCAGCACCTTCTACACAGCATGCTCCGGATGCTCGAAATTCATTGCAGCGCTTTAGTGAGCGGAGTTCTATGGCACCCATGATGCGGCAAATGCAAGTATATCGACGAAAGAGGCTTCCTTCTCATGATCGTGAGCGTGATCTGAGTGTTGAACACCCTGAGATGGATGATGACAACACAATGATGAACATGCACAAGAAGCGGAGGAAACGTGAGAGTAAGGATATGAGGATTAATCGTGATCAGGATGAGAGAGAACCTGATCATATAAATGCTCAACAATTTCTTGAGAAAAAGAAATCTGTCAAGAAAGCTGAAGGTTTTGGGTTGGCTTCAGACTTTTCTTCTAAGGAAGACAAGGATACCTTAAAGAACATGTATAGTCAAGCATTCAGTTTCTTTGAGAAAGTTAAGGAGAAGTTGAACAGTGCTGATGACTACCAAGCTTTCTTGAAGTGCCTTCATAATTTTTTCGTCAGTGAAATAATAAAAAGGAATGAATTGCAAAATTTGGTAACCGATTTACTTGGAAAGCATCTTGATCTTATGGTGGAATTCAATGATTTCCTGGAGTGTTTGGAAAATATTGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGTCACTAAGATCATCAAAGTTGGAGGACAAAGACAAAGACAAAGAGCAGAAGCGTGAGATGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAGGAGTACATGGGAAAATCCATTCAAGAACTTGACCTCAGTGACTGTAAATGTTGCACTCCCAGCTACCGGCTTCTACCTGCTGATTATCCAATTCCTACAGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCTGTGAGTTCAGGAAGTGAGGATTACTCTTCCGAACATATGTGCAGGAATCAGTACGAAGAAAGCTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGTTATTAGAGTCTGTGAGTTCTGCAGCTAAACGTGCAGAGGAATTATATAATAACATGAATGAAAATAAGATCAATATGGAGACTCTGAACCGTATTGAAGATTACTTTACTGTTCAAAATTTAAGGTGCATTGAACGTCTATATGGTGACCATGGTCTTGACGTTATAGACATATTGCGTAAAAACCCAACTCGTGCGCTCCCTGTAATATTGACTCGACTGAAGCAGAAACAGGAGGAATGGAGTCGGTGTCGTTCAGATTTCAATAAAGTTTGGGCTGAAATTTATTCTAAAAATCACTTAAAGTGA 1506 0.3971 MITEKTQLVVQNLFVNKIKKRFQSDEHVYKSFLNISNMYRKEHKDIGEIYSEVATLFKDHRDLLEEFTRFLPDSFAAPSTQHAPDARNSLQRFSERSSMAPMMRQMQVYRRKRLPSHDRERDLSVEHPEMDDDNTMMNMHKKRRKRESKDMRINRDQDEREPDHINAQQFLEKKKSVKKAEGFGLASDFSSKEDKDTLKNMYSQAFSFFEKVKEKLNSADDYQAFLKCLHNFFVSEIIKRNELQNLVTDLLGKHLDLMVEFNDFLECLENIDGFLAGVMSKKSLRSSKLEDKDKDKEQKREMDGAKEKERYREKEYMGKSIQELDLSDCKCCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVSSGSEDYSSEHMCRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNMNENKINMETLNRIEDYFTVQNLRCIERLYGDHGLDVIDILRKNPTRALPVILTRLKQKQEEWSRCRSDFNKVWAEIYSKNHLK 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi246g00001 501 MobiDBLite consensus disorder prediction 287 311 - -
Gabi246g00001 501 SUPERFAMILY PAH2 domain 199 266 IPR036600 GO:0006355
Gabi246g00001 501 FunFam Paired amphipathic helix SIN3-like protein 5 74 - -
Gabi246g00001 501 SUPERFAMILY PAH2 domain 14 73 IPR036600 GO:0006355
Gabi246g00001 501 MobiDBLite consensus disorder prediction 111 140 - -
Gabi246g00001 501 Gene3D Paired amphipathic helix 196 269 IPR036600 GO:0006355
Gabi246g00001 501 Pfam Paired amphipathic helix repeat 220 265 IPR003822 GO:0006355
Gabi246g00001 501 Pfam Paired amphipathic helix repeat 27 71 IPR003822 GO:0006355
Gabi246g00001 501 MobiDBLite consensus disorder prediction 149 165 - -
Gabi246g00001 501 Coils Coil 401 431 - -
Gabi246g00001 501 FunFam Paired amphipathic helix protein SIN3 195 270 - -
Gabi246g00001 501 PANTHER SIN3B-RELATED 14 501 IPR039774 GO:0003714
Gabi246g00001 501 MobiDBLite consensus disorder prediction 75 165 - -
Gabi246g00001 501 MobiDBLite consensus disorder prediction 81 101 - -
Gabi246g00001 501 ProSiteProfiles PAH domain profile. 4 74 IPR003822 GO:0006355
Gabi246g00001 501 Pfam Sin3 family co-repressor 331 422 IPR013194 -
Gabi246g00001 501 ProSiteProfiles PAH domain profile. 198 268 IPR003822 GO:0006355
Gabi246g00001 501 Gene3D Paired amphipathic helix 13 72 IPR036600 GO:0006355
Gabi246g00001 501 SMART hdac_interact2seq4b 328 428 IPR013194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi246g00001 Gabi-Chr246 4886 12762 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi246g00001 Sin3_corepress 1.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi246g00001 K11644 - gmx:100807181 754.977