Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2469g00017 ATGGCCGAAGCTTCAAGAATCACTTACACTACTCTCATTCCTGGTTTTAGCTCAACAACTCAGAGAACTCATGTGGGTCTGGGTCACCTTAAGCTAACTGTGTCACGCAAGTACCAAATTCATTGTTCAGTTTCTGCTAATGCAAGTGCAAGTGGTGCCACTCAAACCTCAGTGATGGAAACCATTCCTTGGGGGTGTGAGATTGATTCATTAGAAAATGCATCAGCTTTGCAGAGATGGTTGTCAGAGTCAGGGCTTCCACCACAGAAGATGGCCATAGAAAAAGTGGATGTGGGTGAGAGAGGACTTGTTGCTTTGACCAATATCAGAAAAGGGGAGAAGCTTCTCTTTGTGCCTCCCAAATTAGTCATAACTGCTGATTCTGAATGGAGCTGCCGAGAAGCTGGTGAAGTATTGAAAAGGAATTCAGTGCCAGATTGGCCATTGCTCGCAACTTACCTCATAAGTGAAGCTAGCCTCATGAAATCTTCAAAATGGAGCAATTATATATCAGCCTTACCTCGACAACCTTACTCACTTCTTTACTGGTCACGAGCAGAACTAGATCGCTACTTGGAAGCTTCTCAGATTAGGGAGAGAGCAATTGAGAGGATTAATAATGTTATTGGAACATACAATGATTTGAGGCTCAGAATATTTTCCAAATACCCTGATTTATTTCCTGAAGAGGTGTTCAACATAGAGTCCTTCAAATGGTCGTTTGGCATTCTTTTCTCCCGCTTGGTTCGGTTACCCTCAATGAATGGAAAGGTTGCCTTGGTTCCTTGGGCAGATATGCTGAATCATAGTTGTGATGTGGATACATTTTTGGACTATGATAAGCTGTCAAAGGGAATTGTCTTTACGACAGATCGGCCCTATCAACCAGGTGAGCAGGTGTTTATTTCATATGGAAAAAAATCCAATGGGGAGCTTCTGTTATCTTACGGATTTGTTCCAAGGGAAGGTGATAATCCTAGAGATTCAGTTGAGTTGTCACTATCACTCAAGAAATCTGATGGGTCCTATCTGGAGAAGTTAGAACTGTTGAAGAAGTATGGATTATCAGGATCTCAGTGTTTTCCTATACAGATTACTGGTTGGCCATTGGAGTTAATGGCTTATGCTTATTTAGCTGTTAGTCCTTCAAGCATGAGAGGGCAATATGAAGAGATGGCTGCTGCAGCTTCGAATAAAATTTCCTCCAAGAAGGATTTGAGATATCCTGAAATAGAGGAGCAAGCATTGCAATTCATACTAGATAGCTGTGAATCCAGTATATCAAAATACAACAAGTTCTTACAGGTAAGTGGATCACTGGATTTGGACGTGACTTCTCCAAAACAACTCAACCGAAGACTCTTTCTGAAACAGCTAGCTGTGGACTTGTGTACTAGTGAGCGAAGGATATTATTTCGTTCTCAATACATACTGCGAAGAAGATTGAGGGATATGAGAGCTGGAGAATTAAGAGCTCTAAAAATCTTTGATGGGTTCCGGAATCTTTTCCAATGA 1515 0.4152 MAEASRITYTTLIPGFSSTTQRTHVGLGHLKLTVSRKYQIHCSVSANASASGATQTSVMETIPWGCEIDSLENASALQRWLSESGLPPQKMAIEKVDVGERGLVALTNIRKGEKLLFVPPKLVITADSEWSCREAGEVLKRNSVPDWPLLATYLISEASLMKSSKWSNYISALPRQPYSLLYWSRAELDRYLEASQIRERAIERINNVIGTYNDLRLRIFSKYPDLFPEEVFNIESFKWSFGILFSRLVRLPSMNGKVALVPWADMLNHSCDVDTFLDYDKLSKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPREGDNPRDSVELSLSLKKSDGSYLEKLELLKKYGLSGSQCFPIQITGWPLELMAYAYLAVSPSSMRGQYEEMAAAASNKISSKKDLRYPEIEEQALQFILDSCESSISKYNKFLQVSGSLDLDVTSPKQLNRRLFLKQLAVDLCTSERRILFRSQYILRRRLRDMRAGELRALKIFDGFRNLFQ 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2469g00017 504 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 335 499 IPR036464 -
Gabi2469g00017 504 Gene3D set domain protein methyltransferase, domain 1 33 318 - -
Gabi2469g00017 504 SUPERFAMILY SET domain 73 321 IPR046341 -
Gabi2469g00017 504 FunFam Rubisco methyltransferase family protein 324 487 - -
Gabi2469g00017 504 SMART set_7 89 311 IPR001214 GO:0005515
Gabi2469g00017 504 Pfam Rubisco LSMT substrate-binding 338 471 IPR015353 -
Gabi2469g00017 504 PIRSF RMT_SET 1 501 IPR011192 GO:0009507|GO:0030785
Gabi2469g00017 504 CDD SET_RBCMT 88 319 IPR044431 GO:0016279|GO:0018022
Gabi2469g00017 504 Gene3D - 323 493 IPR036464 -
Gabi2469g00017 504 Pfam SET domain 101 305 IPR001214 GO:0005515
Gabi2469g00017 504 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 56 318 - -
Gabi2469g00017 504 ProSiteProfiles SET domain profile. 89 305 IPR001214 GO:0005515
Gabi2469g00017 504 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 72 442 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2469g00017 76 269 NAC Transcription Factor Family AT3G56570 22.959 1.58e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi2469g00017 SET 9.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2469g00017 - - gmx:100803319 855.129