Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2469g00011 ATGTCTTCTAGAAAGTTCGATAACCCTCACTCCGGCGACGGTGCTAGTCCCGGGAAAATCTTCATCGGAGGGTTAGCCAAAGACACAACCTCGGATACGTTCGTGAAGTATTTTGAGAAGTACGGAGAGATAACTGACTCGGTTATCATGAAGGATCGACATACGGGTCGGGCCAGAGGATTCGGGTTTATAACCTACGCGGATCCTTCTGTTGTTGACCAAGTCATTCAAGAGAACCATGTCATCAATGGCAAGCAGGTTGAGATAAAGAGGACTATTCCAAAGGGTTCATCACAAGCTAATGACTTCAAAACAAAGAAGATTTTTGTTGGTGGTATTCCAACTTCAGTATCTGAAGATGAGTTGAAGAACTTCTTCTCCAAGTATGGTAAGGTTGTGGAACATGAGATTATACGTGACCACACTACGAAACGTTCCCGGGGCTTTGGGTTTATAGTTTTTGACAATGAAAAGGTTGTTGATAATTTATTGACAGATGGGAACATGATTGATATGGATGGTACTCAGGTTGAGATCAAGAAGGCCGAACCAAAGAAATCCTCAAACCCAGGTTCTCTTCCTCCATTTGCTAGTGACTCTAGGCCACGTTCTTACAATGATGGTTTTGGTGGATTTGGCGATTCTTATGGAAGTTTTGCGGGTAGCGGTTATGGTCCTGGTTCTTATAGGTCACTTGGAGGTTTTGGCGGTAGGCTCGGTGATTATGGTGGGTATGGAGGTGGAGATGACTTCGGTGGTAGTTTTGGGGGTTATGGTGGCAGCGCTGGTGGCTATGCAGGTTATCGAGGAGAATCATCATTTGGTTACTCTAGTCGCTATGGATCCTACATGGGGGGCCTTGGTGGTGGATATGGTGCTGGTGGGTTAGGCGCATATGGACGAGGTGGTGGGGGCTATGGCAGTTATGGTGGTCCAGGCACTGGTGGGGGCTATGAATCAGGCCCTGGTGCTGGTTATGGTGGGGCAGGAGGACTGTATCCTAGTAGGGGAAGTTATGGTGGCAGTAGTCGATACCATCCTTACGCAAGATAG 1053 0.472 MSSRKFDNPHSGDGASPGKIFIGGLAKDTTSDTFVKYFEKYGEITDSVIMKDRHTGRARGFGFITYADPSVVDQVIQENHVINGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTSVSEDELKNFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDNEKVVDNLLTDGNMIDMDGTQVEIKKAEPKKSSNPGSLPPFASDSRPRSYNDGFGGFGDSYGSFAGSGYGPGSYRSLGGFGGRLGDYGGYGGGDDFGGSFGGYGGSAGGYAGYRGESSFGYSSRYGSYMGGLGGGYGAGGLGAYGRGGGGYGSYGGPGTGGGYESGPGAGYGGAGGLYPSRGSYGGSSRYHPYAR 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2469g00011 350 SUPERFAMILY RNA-binding domain, RBD 106 260 IPR035979 GO:0003676
Gabi2469g00011 350 SUPERFAMILY RNA-binding domain, RBD 12 98 IPR035979 GO:0003676
Gabi2469g00011 350 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Gabi2469g00011 350 MobiDBLite consensus disorder prediction 180 201 - -
Gabi2469g00011 350 FunFam Heterogeneous nuclear ribonucleoprotein 1 17 98 - -
Gabi2469g00011 350 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Gabi2469g00011 350 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 86 IPR000504 GO:0003723
Gabi2469g00011 350 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Gabi2469g00011 350 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 10 350 - -
Gabi2469g00011 350 Gene3D - 97 218 IPR012677 -
Gabi2469g00011 350 SMART rrm1_1 107 180 IPR000504 GO:0003723
Gabi2469g00011 350 SMART rrm1_1 19 90 IPR000504 GO:0003723
Gabi2469g00011 350 Gene3D - 18 96 IPR012677 -
Gabi2469g00011 350 FunFam Heterogeneous nuclear ribonucleoprotein 1 99 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2469g00011 Gabi-Chr2469 122008 125499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2469g00011 4 177 Eukaryotic Initiation Factors Gene Family AT1G71770 26.562 8.20e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2469g00011 K12741 - gmx:100801373 404.445