Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2469g00004 ATGGGTTATATATGTGATTTTTGTGGAAACCAGAGGTCCATGGTGTACTGCCGATCTGATGCTGCGTGCTTATGTTTGTCATGCGATCGAAATGTTCATTCCGCTAATGCCCTTTCCAGGCGTCATTCGCGGACTCTTTTATGCGAGAGATGTAATTCACAACCTGCCTTTGTAAGGTGTGCTGAAGAGAAAATTTCACTTTGCAAGAATTGTGATTGGTTAGGTCATGGTACCTCTACATCTTGTTCAACACATAATAGGCAACCAATCAGCTGCTATTCTGGCTGCCCTTCAGCGGCAGAACTGTCTTCTATGTGGTCATTTGTGTTGGATATCCCTTCATTGAGTGAATCTACATGTGAGCAAGAACTAGGATTAATGAGTATTAATGAGAACAGCAACAAGACTTCTTGGATTCCTCCAGAAAACCAGAATGCTTCTCGTTCAGATAAAGTTACTGATGCACCTGGTATGGATAAGTCTTGGGTTTGTACATCTTCAATGCCCGAGTCAAGCTCAGAACCTCGTATTCTGGACCAGCCAGCTGGACCTGCCAATGAATTTATGCCAAAGTTATACTGTCCTGCTACCAAATGCCCTGCACTATGTGAAGATGATGATCTGTATGCTGATTTCAACATGGATGAAGTGGATCTAAATCTTGAGAACTACGAAGAACTTTTTGGTATGTCCCTCAGTCATTCTGAGGAACTTTTTGAAAATGGTGGCTTTGATAGCTTGTTTGGGACAAAGGATATGTCTGCTGCAGATTCCAATTGTCAGGATGCTGTTGCTGCTGAGGGGTCATCAGTTGGACTGGTCAATCCATTGCAACCAGCATGCAGCAATGCAGCATCTGCAGATTCCATATTGAGCACTAAAACTGAACCAGTTCTTTGTTTTACGGGAAGGCAAGCCCAATCAAACCTTTCTTTTACTGGCATTACTGCAGAGAATAATGCTGCAGAATCTCAAGATTGTGGGGCTTCTTCGACGCTTTTTATGGGAGAACCTCCTTGGTTTACTCCTTGTCCTGAGAATTCCCTACAATCTGCTAACCGCTGTAATGCTGTCATGCGTTATAAGGAAAAGAAGAAGACACGCAAGTTTGACAAAAGAGTGAGGTATGCCTCTCGCAAGGCAAGAGCCGATGTCAGAAGGCGTGTCAAGGGCCGGTTTGTCAAAGCCGGTGACATGTATGATTATGACCCTTTGAGCCAAACCAGAAGCTACTGA 1236 0.4385 MGYICDFCGNQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNSQPAFVRCAEEKISLCKNCDWLGHGTSTSCSTHNRQPISCYSGCPSAAELSSMWSFVLDIPSLSESTCEQELGLMSINENSNKTSWIPPENQNASRSDKVTDAPGMDKSWVCTSSMPESSSEPRILDQPAGPANEFMPKLYCPATKCPALCEDDDLYADFNMDEVDLNLENYEELFGMSLSHSEELFENGGFDSLFGTKDMSAADSNCQDAVAAEGSSVGLVNPLQPACSNAASADSILSTKTEPVLCFTGRQAQSNLSFTGITAENNAAESQDCGASSTLFMGEPPWFTPCPENSLQSANRCNAVMRYKEKKKTRKFDKRVRYASRKARADVRRRVKGRFVKAGDMYDYDPLSQTRSY 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2469g00004 411 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Gabi2469g00004 411 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gabi2469g00004 411 CDD Bbox1_BBX-like 47 90 - -
Gabi2469g00004 411 Pfam CCT motif 354 396 IPR010402 GO:0005515
Gabi2469g00004 411 MobiDBLite consensus disorder prediction 135 154 - -
Gabi2469g00004 411 ProSiteProfiles CCT domain profile. 354 396 IPR010402 GO:0005515
Gabi2469g00004 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 398 - -
Gabi2469g00004 411 CDD Bbox1_BBX-like 4 47 - -
Gabi2469g00004 411 SMART bboxneu5 48 90 IPR000315 GO:0008270
Gabi2469g00004 411 SMART bboxneu5 4 47 IPR000315 GO:0008270
Gabi2469g00004 411 MobiDBLite consensus disorder prediction 135 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2469g00004 Gabi-Chr2469 29240 34336 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2469g00004 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 54.245 9.99e-149 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gabi2469g00004 CCT 6.9e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2469g00004 - - gmx:100800832 699.893