Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2467g00013 ATGGAAGTGGAGATGGAAAATACTACATCGAATGTTACTGCAGAATCCTCTATACCAACCTCTGATGGTCAAAATCCGATTTCTCCGGTCAATGCAACAACATTGCCTCATCCAATACAACCTATTTTACCACCAGTTATTCCACCTTCTGTTGTACCTCCTCTAGCTCCAATCCCTACAATTCCTCCCTCTCTTGCTGTCCGGCCACTGGCTCCACTTCCAGTTCAGCCACCAGTTATTAGGCCACCTGTGCCACAAAATGGCGAGGTTGGATCAAGTGATTCTGATTCAGATCATGATGGCTCGGACACCAGAATTAACCAGGGTACAGGGGAGTATGAGATATCGCAAGAGAGTAGACTGGTAAGAGAGCGGCAGGAAAAAGTAATGCAAGAACTCATGATGAGGAGGCGTTCTGCTGCTGTCACTGTTCCTACAAATGATATGGCTGTGCGAGCTCGTCTTCGCCATCTTGGTGAGCCCGTAACTCTCTTTGGTGAGAGGGAGATGGAGAGAAGAGACAGGTTGCGGATGATTATGGTAAAGCTAGATGATGCTGATGGACAACTTGAAAGGCTGATGAAAGCTCTTGAGGATGAAGAGGCTGCAGCTTCTGCTCCAAAAGATGAGGCTGATGAAGAACTGCAATATCCTTTTTACACTGAAGGGTCAAAGTCTCTCCTAGATGCCAGAATTGATATTGCTAAATATTCTTTAGTAAGGGCAGCATTGCGTATTCAACGTGCCCAGAGAAAAAAAGATGATCCAGATGAAGATACGGATGCAGAGATGGATTTGGCATTGAAACAGGCTGATAATCTGAGTCTTGAATTCAGTGAAATTGGAGATGATCGGCCACTTTCAGGTTGCTCCTTCTCACGCGATGGAAAATGGCTTGCTACTTGTTCTCTAACTGGATCTGCCAAGTTGTGGAGCATGCCTAAAGTAAGAAAATTTTCTACCTTTAAGGGGCACACCGAGCGTGCTACTGATGTTGCTTATTCACCTATGCATAATCATATAGCAACTGCCTCTGCTGATCGGACTGCTAGGTATTGGAATGATCAAGGATCCCTTTTGAAGACATTTGAGGGTCATCTTGACCGTCTTGCACGCATTGCCTTCCATCCATCAGGGAAGTATCTTGGCACTGCTAGCTTTGACAAGACATGGAGATTGTGGGACATAGAAACAGGAGAGGAGTTGCTTCTTCAAGAAGGCCATAGTAGAAGTATATATGGTTTAGCTTTCCACCACGATGGATCATTAGCTGCATCTTGTGGACTGGATGCTCTGGCTCGTGTTTGGGACCTCCGAACTGGGAGAAGTATTCTTGCACTGGAAGGTCATGTCAAGCCGGTTCTCGGCATCAGTTTTTCACCTAATGGATACCATTTAGCCACGGGTGGTGAAGACAACACTTGTCGCATTTGGGATTTGAGGAAGAAGAAATCCTTGTACACCATTCCTGCTCACTCTAATTTAATATCACAAGTTAAATTTGAGCCACAAGAGGGTTACTTTTTAGTAACTGCCTCATATGACATGACAGCTAAGGTTTGGTCAGCCCGTGACTTTAAGCCTGTGAAGACACTATCTGGGCATGAAGCAAAAGTTACTTCTCTGGATGTTCTTGGAGATGGCGGGTATATTGTTACTGTCTCCCATGATCGCACCATAAAGCTGTGGTCCAGCAACATGACTAGTGAACAAGCTATGGATGTTGATTAA 1731 0.4506 MEVEMENTTSNVTAESSIPTSDGQNPISPVNATTLPHPIQPILPPVIPPSVVPPLAPIPTIPPSLAVRPLAPLPVQPPVIRPPVPQNGEVGSSDSDSDHDGSDTRINQGTGEYEISQESRLVRERQEKVMQELMMRRRSAAVTVPTNDMAVRARLRHLGEPVTLFGEREMERRDRLRMIMVKLDDADGQLERLMKALEDEEAAASAPKDEADEELQYPFYTEGSKSLLDARIDIAKYSLVRAALRIQRAQRKKDDPDEDTDAEMDLALKQADNLSLEFSEIGDDRPLSGCSFSRDGKWLATCSLTGSAKLWSMPKVRKFSTFKGHTERATDVAYSPMHNHIATASADRTARYWNDQGSLLKTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRSIYGLAFHHDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSARDFKPVKTLSGHEAKVTSLDVLGDGGYIVTVSHDRTIKLWSSNMTSEQAMDVD 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2467g00013 576 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 363 400 - -
Gabi2467g00013 576 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 447 481 - -
Gabi2467g00013 576 SUPERFAMILY PRP4-like 128 186 IPR036285 -
Gabi2467g00013 576 ProSiteProfiles Trp-Asp (WD) repeats profile. 322 354 IPR001680 GO:0005515
Gabi2467g00013 576 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 322 354 - -
Gabi2467g00013 576 FunFam U4/U6 small nuclear ribonucleoprotein Prp4 490 566 - -
Gabi2467g00013 576 Pfam WD domain, G-beta repeat 357 395 IPR001680 GO:0005515
Gabi2467g00013 576 Pfam WD domain, G-beta repeat 527 564 IPR001680 GO:0005515
Gabi2467g00013 576 Pfam WD domain, G-beta repeat 406 437 IPR001680 GO:0005515
Gabi2467g00013 576 Pfam WD domain, G-beta repeat 288 312 IPR001680 GO:0005515
Gabi2467g00013 576 Pfam WD domain, G-beta repeat 319 354 IPR001680 GO:0005515
Gabi2467g00013 576 Pfam WD domain, G-beta repeat 445 479 IPR001680 GO:0005515
Gabi2467g00013 576 Pfam WD domain, G-beta repeat 485 522 IPR001680 GO:0005515
Gabi2467g00013 576 MobiDBLite consensus disorder prediction 1 39 - -
Gabi2467g00013 576 ProSitePatterns Trp-Asp (WD) repeats signature. 466 480 IPR019775 -
Gabi2467g00013 576 Gene3D - 122 205 IPR036285 -
Gabi2467g00013 576 ProSiteProfiles Trp-Asp (WD) repeats profile. 532 564 IPR001680 GO:0005515
Gabi2467g00013 576 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 532 564 - -
Gabi2467g00013 576 CDD WD40 286 564 - -
Gabi2467g00013 576 PRINTS G protein beta WD-40 repeat signature 551 565 IPR020472 -
Gabi2467g00013 576 PRINTS G protein beta WD-40 repeat signature 382 396 IPR020472 -
Gabi2467g00013 576 PRINTS G protein beta WD-40 repeat signature 466 480 IPR020472 -
Gabi2467g00013 576 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 262 446 - -
Gabi2467g00013 576 ProSitePatterns Trp-Asp (WD) repeats signature. 424 438 IPR019775 -
Gabi2467g00013 576 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 405 442 - -
Gabi2467g00013 576 ProSiteProfiles Trp-Asp (WD) repeats profile. 489 531 IPR001680 GO:0005515
Gabi2467g00013 576 ProSiteProfiles Trp-Asp (WD) repeats profile. 405 446 IPR001680 GO:0005515
Gabi2467g00013 576 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 489 522 - -
Gabi2467g00013 576 SMART WD40_4 356 395 IPR001680 GO:0005515
Gabi2467g00013 576 SMART WD40_4 482 522 IPR001680 GO:0005515
Gabi2467g00013 576 SMART WD40_4 271 312 IPR001680 GO:0005515
Gabi2467g00013 576 SMART WD40_4 440 479 IPR001680 GO:0005515
Gabi2467g00013 576 SMART WD40_4 398 437 IPR001680 GO:0005515
Gabi2467g00013 576 SMART WD40_4 315 354 IPR001680 GO:0005515
Gabi2467g00013 576 SMART WD40_4 525 564 IPR001680 GO:0005515
Gabi2467g00013 576 Coils Coil 180 203 - -
Gabi2467g00013 576 SUPERFAMILY WD40 repeat-like 275 563 IPR036322 GO:0005515
Gabi2467g00013 576 MobiDBLite consensus disorder prediction 77 120 - -
Gabi2467g00013 576 PANTHER WD40 REPEAT PROTEIN 95 565 - -
Gabi2467g00013 576 Gene3D - 264 448 IPR015943 GO:0005515
Gabi2467g00013 576 Pfam pre-mRNA processing factor 4 (PRP4) like 151 177 IPR014906 -
Gabi2467g00013 576 ProSiteProfiles Trp-Asp (WD) repeats profile. 447 488 IPR001680 GO:0005515
Gabi2467g00013 576 SMART pr04_2 146 196 IPR014906 -
Gabi2467g00013 576 Gene3D - 449 574 IPR015943 GO:0005515
Gabi2467g00013 576 ProSitePatterns Trp-Asp (WD) repeats signature. 382 396 IPR019775 -
Gabi2467g00013 576 MobiDBLite consensus disorder prediction 1 35 - -
Gabi2467g00013 576 ProSiteProfiles Trp-Asp (WD) repeats profile. 363 404 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2467g00013 Gabi-Chr2467 301621 305678 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2467g00013 367 563 U-box Gene Family AT2G33340 22.172 2.61e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2467g00013 K12662 - gmx:100788948 937.947