Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2465g00013 ATGGGTAGCATCAGAGAAGGGGTTGAAGTTGCAGAAGAGCGAGAGGAGGACACAGTGTATGTTGCGGTGGGTAAGAACGCGGAGAAGAGTCAACAACTGTTGCATTGGGCAGCTCAGAATTTCTCAGGGAAGAAAATTTGTGTTCTTCACGTTCACCAACCTGAGCCTGTGAATTCGTTGACAGACGGATACCTCTCTGGTTATGAACCCAAAGACAATGCAATCAAGGCATTCCAGGAGCATGGAAGTCAAACAGTGCATGAACTCCTAGACCAATACATTCTCACTCTGGTCCCAGCAGGAGTACAGGCCTATAAGTTGTTGATTGAGAGGGATGATATTGAAAAGGGGATCGTAGAAGCAATTGCTAAACACAATATTAGATGGCTTGTAATGGGAGCAGCAGCAGACAGATATAACTTGGGTAAACTGGCTGAGCAAGAATCGGAGAAAGCTATTCTTGTATGTGAAAAAGCATTGCTATCCTGTAATATTTGGTTCATTTGCAAGGGCAGCCTCATATGTACTAGGGTAGATAGTAAACATACATCTGAAATAGAGACTGCCCCTCCATTGTTGGTGCTCAATTCAAATACGGAAGCCAAACAATCAGAAAAGTTTAAATCAGAATCGATTCATGATGCATTGAAATATTTAGATTCTGATGATATGGAAGAGATTGAAAATGTCAATTCCCACTGTTCGTTAAATTCAAAATGGTCCTTGAATAGTGTTGTTGACAGGACGAAGTTGACAGATTTGCTTTTTCATGAGGACAAAACATTTCAAAGCTGGTGTGCTAAGGAGATAAGTAGAAGAAAAGAAGTTGAAGAACAGTTGGCAAGGGAAAAGCTAGAAGTACAGAAAATGAAGAATCAACGAGATGAAATAACGTATGAATTGCAAATGGTCCAAGACCAAATTTCAGCCCTTAAGAGCCAATTTTTTGAGTCCCAGTGTACGGTGACAGAGTTGGAGGAGAAGATCATATCAGCTGTGGACCTCTTGATAAGTTTCAGGGAAAAACGAGATAAGCTAAGGATAGAGCATGCAAATGCCGTTAGGAAAGTCAAAGTGATGAGGGAATTTGGAGATGCTACATTCTCTTATGCTGTAGAATTTCCAGCATTTTCCTTCATGGAGATCAATGAGGCAACTCACGATTTTGACCCATCTTGGAAGGTTGGCGAGGGAAGGTATGGAAGTGTTTACAAGGGATTGCTTCGCAACATGCATGTCGCCATAAAAATGTTACCCTCTTATGGTTGTCAGAGCCAACTTGAGTTCCAACATCAGGTAGAGGTTTTGAGTAGGGTAAGACATCCAAACCTGTTAACACTAATTGGAAGCTGTGCAGAGTCCAGGTCACTTGTGTATGAGTACCTAAACAATGGCAGCCTTGAAAGCCACCTTGCCCGCAAAGACAAGACACCACTTCCATGGCAAATTCGAATATCCATTGCTACTGACATATGCTCTGCTGTAGTCTTCCTTCACTCAAGTGAACCTTGTATTATCCATGGGAATTTGAAACCTAGTAAGATCCTCCTTGATTCTAACTTTGTTGCCAAACTTGGTGACTTGGGCATTGCTTCTTTAGTCCAACAAAGTGTGGATTCAGCTGACAAAAGCACAATATGTAACAACCCAAATGAAAGTTTGGCGTATTTAGATCCGGAGTATCTTGTCACTGGCAAGTTCACACCAGAATCAGATGTGTATTCATTCGGAATCATATTGTTACAACTTCTAACTGGAAGACCACTTTCGGGGCTAGTTAGAGATATGAAATGTGCATTGAAAAAGGAAAACCTTAAAGCAGTATTGGACTTTTCAGCTGGTGAATGGCCTCTTCATCAAACCGAACAACTGGCATATTTAGCATTGAGGTGTTGCAAAAAGACTTGGTTGAACCGGCCAGACCTTGTGTCCGAAATCTGGTGTGTTCTTGAACCATTCAGAGCTACTTGCATCAACATGCCACCATGTTTGACTTCAAAGAAGCTTCAACGTGCTCCTTCGCATTTTGTCTGCCCCATTTTTCAGGAAGTGATGGAAGATCCATACATAGCTGCCGATGGCTTTACATACGAAGCAGAGGCAATAAGAGGATGGTTGAAAAGTGGTCACGACACTTCCCCCATGACAAACCTCAAGCTTGAACACACAGATTTGATGCCTAATTATGCGCTACATAATGCAATTCAGGAGTGGCAACAACAGTGA 2226 0.42 MGSIREGVEVAEEREEDTVYVAVGKNAEKSQQLLHWAAQNFSGKKICVLHVHQPEPVNSLTDGYLSGYEPKDNAIKAFQEHGSQTVHELLDQYILTLVPAGVQAYKLLIERDDIEKGIVEAIAKHNIRWLVMGAAADRYNLGKLAEQESEKAILVCEKALLSCNIWFICKGSLICTRVDSKHTSEIETAPPLLVLNSNTEAKQSEKFKSESIHDALKYLDSDDMEEIENVNSHCSLNSKWSLNSVVDRTKLTDLLFHEDKTFQSWCAKEISRRKEVEEQLAREKLEVQKMKNQRDEITYELQMVQDQISALKSQFFESQCTVTELEEKIISAVDLLISFREKRDKLRIEHANAVRKVKVMREFGDATFSYAVEFPAFSFMEINEATHDFDPSWKVGEGRYGSVYKGLLRNMHVAIKMLPSYGCQSQLEFQHQVEVLSRVRHPNLLTLIGSCAESRSLVYEYLNNGSLESHLARKDKTPLPWQIRISIATDICSAVVFLHSSEPCIIHGNLKPSKILLDSNFVAKLGDLGIASLVQQSVDSADKSTICNNPNESLAYLDPEYLVTGKFTPESDVYSFGIILLQLLTGRPLSGLVRDMKCALKKENLKAVLDFSAGEWPLHQTEQLAYLALRCCKKTWLNRPDLVSEIWCVLEPFRATCINMPPCLTSKKLQRAPSHFVCPIFQEVMEDPYIAADGFTYEAEAIRGWLKSGHDTSPMTNLKLEHTDLMPNYALHNAIQEWQQQ 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2465g00013 741 Pfam Protein tyrosine and serine/threonine kinase 394 642 IPR001245 GO:0004672|GO:0006468
Gabi2465g00013 741 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 671 741 IPR013083 -
Gabi2465g00013 741 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 21 135 - -
Gabi2465g00013 741 CDD STK_N 18 171 - -
Gabi2465g00013 741 CDD RING-Ubox_WDSUB1-like 673 728 - -
Gabi2465g00013 741 ProSiteProfiles Protein kinase domain profile. 389 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2465g00013 741 Coils Coil 266 307 - -
Gabi2465g00013 741 PANTHER OS02G0152300 PROTEIN 19 737 - -
Gabi2465g00013 741 SMART Ubox_2 675 738 IPR003613 GO:0004842|GO:0016567
Gabi2465g00013 741 SUPERFAMILY RING/U-box 670 741 - -
Gabi2465g00013 741 ProSiteProfiles U-box domain profile. 671 741 IPR003613 GO:0004842|GO:0016567
Gabi2465g00013 741 ProSitePatterns Protein kinases ATP-binding region signature. 395 416 IPR017441 GO:0005524
Gabi2465g00013 741 Pfam U-box domain 672 740 IPR003613 GO:0004842|GO:0016567
Gabi2465g00013 741 Gene3D HUPs 17 150 IPR014729 -
Gabi2465g00013 741 SUPERFAMILY Protein kinase-like (PK-like) 369 648 IPR011009 -
Gabi2465g00013 741 Gene3D Phosphorylase Kinase; domain 1 364 461 - -
Gabi2465g00013 741 Gene3D Transferase(Phosphotransferase) domain 1 462 655 - -
Gabi2465g00013 741 Pfam Universal stress protein family 19 136 IPR006016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2465g00013 Gabi-Chr2465 185356 198154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2465g00013 16 741 U-box Gene Family AT2G45910 40.858 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gabi2465g00013 PK_Tyr_Ser-Thr 2.5e-38 CL0016