Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2464g00014 ATGGCGTCCAAAGGTCCCAGGTCTAAGATTGATCACGAGACCAGAGCTAAACGACAGAGGGCTCTGGAAGCTCCAAGGGAGCCTCGGCGACCCAAAACTCATTGGGACCATGTCTTAGAAGAGATGGTGTGGTTATCAAAGGACTTTGAGTCAGAAAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTTGCTTTAAGAGCCAGCAAAGGCATGTTAGATCAGGCTACAAGAGGAGAAAAGAAGATGAAGGAAGAGGAGCAGCGGTTAAGAAAAGTTGCGCTGAATATTTCTAAGGATGTTAAGAAATTCTGGACAAAAATAGAAAAGCTGGTTCTTTACAAGCATCAAATGGAGCTCGATGAGAAGAAGAAAAAGGCACTTGACAAACAGCTTGAATTTCTTTTAGGGCAAACTGAGAGGTACTCAACAATGTTGGCAGAAAATCTTGTGGATACTTATAAACCAGCAGAGAAAATTCCTGCTGAGTATGACATGAGTATTCAATACAAAGATGTACATGGAGACTTTATTAGTGAACCTAAGGAAGCTAATGTTGATTATCAATTGGATGCACCTGAGAATGATGAAGAATATGATGTACAATCTGATGATGAATTGGAGGATGATGAGCAAACCCTTGAGGAAGATGAGGCTCTTATAACTGAAGGTGAAAGGCAAGAGGAATTGGCAGCTTTGCGTGATGAAATGGATCTTCCAATTGAGGAGTTACTCAAACGTTATGCTGGAGAGAAAGGAGAATCAGTAACGCAAGAAAGTAGTCCAGAGCACAGTGAAGATGGTGGCAAAATAGTTAGAGCTGGTGATGGTGATGTTAAGGAAGGACTAGCATCAGAAAATGGAGATGATCTTTTATCTATCAGCCAAATTGGCACAGGCAACTCCAGCATGGTCCCTGGTCGACGTTGTGATGAAATTAATGGTGTCGTAGCAACGCCTGCAAGCAATGTATCTCAATATGAGGATTGTGAACCGGAAAATTTAAAAGAGGTTCCCAGTGAGACTGTCAATGAAAATTTTGCATATGATTTTACTGATGAAAAGGAAGATGGTGACTTTTTGCTTGGCGCAGAAGATAAGGATGATGAAACAACCTTATCCGAGGAGGAAAAACTGGATAGAGTTGATGCAATTGATTCCAAGGATGAGATTGCACTATTACAAAAGGAGAGTGACATGCCTATTGAGGATCTGCTTGCGAGGTATAAAAAGGATGTGAGTGATGATGAAGACGAAGAAGATGGATCAGATTATGCTTCTGCGTTATCAGAGGACCATTGTGATTCTCCAGTCCATGAAGATCCTGGGCAGATGGATCCTGCTGTATCTATGGATGAAGATATTAAGTCTGGTGAGCACCTGGCTGCTGTACAGTCGCAGGAAGAACAGTGGGAAGCACCTCATGAAAATTTGGAAGAAAGAGAAAGTGAGTATATAATTGCTGATGCAGCGGCTGCTGCAAGATCAGCACAACCAACTGGAAATACTTTCTCCACAACTAAAGTGCGTACAAAGTTTCCTTTTCTACTCAAGTACTCTCTTCGTGAGTATCAACACATTGGATTGGATTGGCTTGTCACGATGTATGAAAAAAGACTGAACGGAATTTTGGCAGATGAAATGGGGCTTGGAAAAACAATTATGACTATAGCCTTGCTTGCACATCTTGCTTGTGAAAAAGGGATTTGGGGTCCGCATCTAATTGTGGTACCAACTAGTGTAATGCTAAACTGGGAGACTGAATTTCTTAAATGGTGTCCTGCTTTTAAAATTTTGACTTATTTTGGAAGTGCAAAAGAGCGAAAACTTAAAAGACAAGGATGGTTGAAACCAAACTCATTTCATGTATGCATAACAACTTATAGATTAGTTATTCAGGATTCCAAAGTTTTCAAGCGCAAAAAGTGGAAGTACTTGATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAGTCACAAAGGTGGCAGACACTGTTGAATTTCAATTCGAAACGACGGATTCTCCTGACTGGAACACCACTGCAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTGATGCCCCATGTTTTCCAGTCACATCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGTTATGGTAGAGGGAGAGGAAAAGGTTAATAAGGAGGTTGTTGATCGTCTGCATAATGTCCTTCGTCCATTCTTACTCCGTCGATTAAAGCGAGATGTAGAGAAGCAACTTCCAATGAAACATGAGCATGTCATATACTGTAGACTGTCAAAGAGGCAGCGGAATTTGTATGAAGATTTCATTGCTAGCTCAGAGACGCAAGCCACTCTTGCAAGCGCCAATTTTTTTGGGATGATTAGTATTATCATGCAACTTCGTAAGGTTTGCAATCATCCTGACCTATTTGAGGGTCGTCCTATTGTCAGTTCTTTTGATATGTGTGGTATTGATATTCAGTTAAGTTCTTCTGTTTGCTCCGTGCTTCTGCCTAGTTCCTTTTCAACAGTGGACCTAAGAGGTCTCGGTCTTCTATTTACTCATCTTGACTATAGTATGACTGCTTGGGAGAGTGATGAAGTTCAAGCTATTGAGACCCCTGCATCTTTAATCATGGAACGTACTGATATAGCTCACCTAGAAGTAATTAGGCCTGGACTGAAATGTCAAAAAAAGCTGCAAGGAACAAATATTTTTGAAGAGATTCAAAGGGCAATTTGGGAAGAGAGGCTAAGAGAGGCAAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGGTGTAAGAAAAGACCCATGTACTCAACGACCCTAAGGGATCTTGTTACCATAAGGCATCCTGTATATGATATTCATCAGGTGAAGGCAAACCCTATTTCATATTTGTACTCATCAAAGCTAGCTGACATTGTTCTCTCCCCGGTTGAACGATTTCGAAGGATGACTGATGTGGTTGAAAGTTTCATGTTTGCAATTCCAGCTGCACGAGCACCCTTTCCAGTTTGCTGGTGCAGTAGAAGTGAAACAACTGTGTTTCTGCACCCATCATACAAGCAGAAATGCTCAGATGTTCTTTCACCGCTACTGTCTCCAATTAGGCCTGCAATTGTCCGCCGGCAAGTGTATTTCCCAGATAGGCGTCTTATACAATTTGACTGTGGGAAACTGCAGGAGCTAGCAATTTTGTTGAGGAAATTAAAATCAGAAGGCCACCGAGCCTTGATATTTACCCAGATGACAAAGATGCTTGACATATTAGAGGCATTCATTAATTTGTATGGTTATACTTACATGCGCTTAGATGGATCAACCCAACCGGAGGAGAGGCAGACCTTGATGCAGCGTTTTAACACAAACCCCAAATATTTTCTTTTCATCTTGTCAACCCGTAGCGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACGGTTATTTTTTATGATAGCGACTGGAATCCTGCTATGGATCAGCAGGCTCAAGATAGGTGCCACAGAATTGGTCAGACACGAGAAGTTCATATATATAGATTGATTAGTGAAAGCACCATTGAGGAGAACATTTTGAAGAAAGCAAACCAGAAGCGAGCACTTGATGATCTAGTTATACAAAGTGGGGGTTATAATACTGAGTTCTTCAAGAAGCTTGATCCTATGGAACTATTTTCAGGTCATAGAACACTTCCAATAAAAAATATGCCAAAGGAGAAAAACCAGAACAATGGAGAAGTTTCTGTTACTAATGCGGATGTAGAGGCTGCATTAAAAGATGTAGAAGACGAAGCAGATTATATGGCTTTGAAGAAAGTTGAACTGGAAGAAGCTGTGGACAACCAGGAGTTTACTGAAGAAGCCATGGGGAGACTTGAAGAGGATGAGTATGTAAATGAAGATGATGAGCCTGCTGAATTAGTTGAATCTGTTCCCAATTTAAGTAAAGAGAACGTGTTAATGTTAAATGGAAATGACCCAAAGGAAGATAGACCACCCTCTGTTGCTGCCAAAGAAGATGATATTGACATGCTAGCTGATGTCAAACAGATGGCTGCAGCTGCAGCTGCTGCTGGACAAGCTATCTCAGCCTTTGAGAATGAGCTACGCCCTATTGATCGATATGCCATTCGTTTTCTGGAGCTGTGGGATCCTATTATAGATAAAACTGCCTTGGAATCTGAAGTCAGGATTGAGGACACAGAATGGGAGTTGGATCGCATTGAAAAGTATAAGGAGGAGATGGAAGCCGAAATTGATGAAGATGAGGAACCTCTTGTATATGAAAGCTGGGATGCTGATTTTGCAACTGAGGCATATCGACAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTTGAATATGAAGCTAAACAGAAAGAGGAAGCTGAGGAAGAAAATTGTGATTCTAAAAAAAGGACTCAACCAAGTGATTCGAAGCCCAAACCTAAAAAGAAACCCAAGAAAGCAAAGTTCAAATCTCTGAAAAAAGGATCTTTAACCTCTGGCTTGAGACCTTTCAAAGAAGATCCACAAGCAGAGTCAATGACCATAGATGATGAGGATGTCACTAGTCTGGATTTTGTCTCTCCAAATTCAATTATGCACAAAAAACGTAAGAAGTCTAAATTAACTACTGATGGTGAAGAAGAAAAAAGACTCACGAAGTCCAAAAAAGCCAAGAGGGATCCTCTGGACATTTGTACATCAGATTTAGAATACAATTCGTTAGTTGTGCTTGATGAACATGCAGAATCAAAGCAACGCGAAAATATGGTTGACTTTGAACAGAAAACAGGTAGCAGGAGTAAGTTGGGAGGAAAAATATCCATAACTCCAATGCCCGTGAAACGGATCTTGATGATAAAACCTGAAAAATTGAAGAAGGGAAGTCTTTGGTCCAAAGATTGTATTCCACCAGCTGATTTTTGGCTGCCTCATGAGGATGCAATATTATGTGCAGTTGTTCATGAATATGGTCCTAACTGGAGTTTGGTTAGCGAAATGCTTTATGGTATGACTGCTGGTGGGTCATACAGGGGGAGATATCGTCATCCTGTCCATTGCTGTGAGAGATTCAGAGAACTATTCCAGAAATATGTCTTGTTCTCGATGGACAATACAAATCATGAGAAGATCAACAGTACTGGCTCTGGCAAGGCTCTTCTTAAAGTTACAGAGGATAACATTCGGATGTTGTTAGATGTTGCTTCTGAGCAGGGAAATAAAGAGTTACTACTGCAGAAGCATTTTTTTGCATTGCTTTCATCTGGCTGGAAGGTGGCATCACATGTTGACCGCCGGCAAAATCCATCGCCTACCTCTAATGGTGTCTATTTCGATCAGAGTTTCTTTACCTCCATTGGCCAGCATTCACAGAATTCCATGAAGAAACCCTCTGAAAGGATGACATTTGCTAATTTGACTCAGAGCAAGAAATTAGTAGCAGCTGCACTTGATGACACCAGAAGTAGACAGGAGAATGACAAAATCTTGCTCTCTAAGCAGGGTGAAAACATGCAAGTGAGTGCAGATCAGCTGGATATAACACTGGAGCTCCAGAAAGCGGAGAGTGATGCCTTATCTTCATTTCCATCTGTTATAAATATATCAATATATGGGGCTGAACCAATACCATCTTTAAATAAGCAAACAGGAGAAGATGATCATCTTAAAGTTTGTTCGTCTGGTGCTGAGAATCGTTTCAGGGAGGCAACCAGAGCTTGTGAAGACGACAGTTCTGGATGGGCTTCATCAGCATTCCCAACAAACGATTCACAGTCTCGACCTGGATCCAGGATACAATCTTCTGGAAAGCAAAAGTCTTCCATCTCTGAGTCTACTAAACCTTCTAGGTCGAAGTCCAAAAGAGCTTCAATGGATCCTAGTGAAATGCATTACCAACAGGGTGAGCAATTATTCCAGTCAATGCTACCACAGGAACTGAGATTTGATTTTAATTCATCCACTATGGATGGAGCTGGAATTGATGATATGGATAGCAATCTCCCCTTTGATTTGAATGTGGAAAGTACCTTGGAAATGGAGAGTTTTGGAGTGGTCCCACATGATTACATAGCTGGTTTGGTCTCAGGCCTTGATGATTGGAATGCATTCCCTGAATATACTGACATTAGATAG 6159 0.4119 MASKGPRSKIDHETRAKRQRALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMLDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDTYKPAEKIPAEYDMSIQYKDVHGDFISEPKEANVDYQLDAPENDEEYDVQSDDELEDDEQTLEEDEALITEGERQEELAALRDEMDLPIEELLKRYAGEKGESVTQESSPEHSEDGGKIVRAGDGDVKEGLASENGDDLLSISQIGTGNSSMVPGRRCDEINGVVATPASNVSQYEDCEPENLKEVPSETVNENFAYDFTDEKEDGDFLLGAEDKDDETTLSEEEKLDRVDAIDSKDEIALLQKESDMPIEDLLARYKKDVSDDEDEEDGSDYASALSEDHCDSPVHEDPGQMDPAVSMDEDIKSGEHLAAVQSQEEQWEAPHENLEERESEYIIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISVMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMCGIDIQLSSSVCSVLLPSSFSTVDLRGLGLLFTHLDYSMTAWESDEVQAIETPASLIMERTDIAHLEVIRPGLKCQKKLQGTNIFEEIQRAIWEERLREAKERAAAIAWWNSLRCKKRPMYSTTLRDLVTIRHPVYDIHQVKANPISYLYSSKLADIVLSPVERFRRMTDVVESFMFAIPAARAPFPVCWCSRSETTVFLHPSYKQKCSDVLSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLPIKNMPKEKNQNNGEVSVTNADVEAALKDVEDEADYMALKKVELEEAVDNQEFTEEAMGRLEEDEYVNEDDEPAELVESVPNLSKENVLMLNGNDPKEDRPPSVAAKEDDIDMLADVKQMAAAAAAAGQAISAFENELRPIDRYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYESWDADFATEAYRQQVEALAQHQLMEELEYEAKQKEEAEEENCDSKKRTQPSDSKPKPKKKPKKAKFKSLKKGSLTSGLRPFKEDPQAESMTIDDEDVTSLDFVSPNSIMHKKRKKSKLTTDGEEEKRLTKSKKAKRDPLDICTSDLEYNSLVVLDEHAESKQRENMVDFEQKTGSRSKLGGKISITPMPVKRILMIKPEKLKKGSLWSKDCIPPADFWLPHEDAILCAVVHEYGPNWSLVSEMLYGMTAGGSYRGRYRHPVHCCERFRELFQKYVLFSMDNTNHEKINSTGSGKALLKVTEDNIRMLLDVASEQGNKELLLQKHFFALLSSGWKVASHVDRRQNPSPTSNGVYFDQSFFTSIGQHSQNSMKKPSERMTFANLTQSKKLVAAALDDTRSRQENDKILLSKQGENMQVSADQLDITLELQKAESDALSSFPSVINISIYGAEPIPSLNKQTGEDDHLKVCSSGAENRFREATRACEDDSSGWASSAFPTNDSQSRPGSRIQSSGKQKSSISESTKPSRSKSKRASMDPSEMHYQQGEQLFQSMLPQELRFDFNSSTMDGAGIDDMDSNLPFDLNVESTLEMESFGVVPHDYIAGLVSGLDDWNAFPEYTDIR 2052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2464g00014 2052 SMART bromneu2 23 94 IPR014012 -
Gabi2464g00014 2052 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 1032 1281 - -
Gabi2464g00014 2052 SMART helicmild6 1091 1174 IPR001650 -
Gabi2464g00014 2052 MobiDBLite consensus disorder prediction 1548 1566 - -
Gabi2464g00014 2052 Pfam Helicase conserved C-terminal domain 1064 1174 IPR001650 -
Gabi2464g00014 2052 MobiDBLite consensus disorder prediction 1918 1955 - -
Gabi2464g00014 2052 MobiDBLite consensus disorder prediction 180 213 - -
Gabi2464g00014 2052 Pfam HSA domain 27 93 IPR014012 -
Gabi2464g00014 2052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 744 1244 IPR027417 -
Gabi2464g00014 2052 SUPERFAMILY Homeodomain-like 1648 1705 IPR009057 -
Gabi2464g00014 2052 MobiDBLite consensus disorder prediction 189 213 - -
Gabi2464g00014 2052 MobiDBLite consensus disorder prediction 1 33 - -
Gabi2464g00014 2052 MobiDBLite consensus disorder prediction 288 302 - -
Gabi2464g00014 2052 PANTHER HELICASE SRCAP-RELATED 15 1951 - -
Gabi2464g00014 2052 MobiDBLite consensus disorder prediction 1911 1972 - -
Gabi2464g00014 2052 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1065 1215 IPR001650 -
Gabi2464g00014 2052 Gene3D - 766 844 - -
Gabi2464g00014 2052 Gene3D - 1031 1280 IPR027417 -
Gabi2464g00014 2052 MobiDBLite consensus disorder prediction 249 306 - -
Gabi2464g00014 2052 CDD DEXQc_SRCAP 520 742 - -
Gabi2464g00014 2052 Pfam SNF2-related domain 537 809 IPR000330 GO:0005524|GO:0140658
Gabi2464g00014 2052 Coils Coil 206 226 - -
Gabi2464g00014 2052 CDD SF2_C_SNF 1050 1185 - -
Gabi2464g00014 2052 Gene3D - 1646 1707 - -
Gabi2464g00014 2052 Gene3D - 488 765 IPR038718 -
Gabi2464g00014 2052 Coils Coil 1401 1421 - -
Gabi2464g00014 2052 SMART ultradead3 516 709 IPR014001 -
Gabi2464g00014 2052 Coils Coil 1452 1472 - -
Gabi2464g00014 2052 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Gabi2464g00014 2052 MobiDBLite consensus disorder prediction 1463 1487 - -
Gabi2464g00014 2052 MobiDBLite consensus disorder prediction 1463 1566 - -
Gabi2464g00014 2052 Coils Coil 1261 1298 - -
Gabi2464g00014 2052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 472 742 IPR027417 -
Gabi2464g00014 2052 FunFam Photoperiod-independent early flowering 1 490 765 - -
Gabi2464g00014 2052 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 532 697 IPR014001 -
Gabi2464g00014 2052 FunFam Photoperiod independent early flowering protein 1646 1707 - -
Gabi2464g00014 2052 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 766 831 - -
Gabi2464g00014 2052 MobiDBLite consensus disorder prediction 409 449 - -
Gabi2464g00014 2052 ProSiteProfiles Myb-like domain profile. 1650 1703 IPR001005 -
Gabi2464g00014 2052 MobiDBLite consensus disorder prediction 249 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2464g00014 Gabi-Chr2464 252037 290194 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2464g00014 540 812 RAD5 or RAD16-like Gene Family AT5G43530 30.124 2.44e-28 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi2464g00014 SNF2_N 9e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2464g00014 K11661 - gmx:100794898 3390.13