Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2464g00013 ATGGCGTCCAAAGGTCCCAGGTCTAAGATTGATCACGAGACCAGAGCTAAACGACAGAGGGCTCTGGAAGCTCCAAGGGAGCCTCGGCGACCCAAAACTCATTGGGACCATGTCTTAGAAGAGATGGTGTGGTTATCAAAGGACTTTGAGTCAGAAAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTTGCTTTAAGAGCCAGCAAAGGCATGTTAGATCAGGCTACAAGAGGAGAAAAGAAGATGAAGGAAGAGGAGCAGCGGTTAAGAAAAGTTGCGCTGAATATTTCTAAGGATGTTAAGAAATTCTGGACAAAAATAGAAAAGCTGGTTCTTTACAAGCATCAAATGGAGCTCGATGAGAAGAAGAAAAAGGCACTTGACAAACAGCTTGAATTTCTTTTAGGGCAAACTGAGAGGTACTCAACAATGTTGGCAGAAAATCTTGTGGATACTTATAAACCAGCAGAGAAAATTCCTGCTGAGTATGACATGAGTATTCAATACAAAGATGTACATGGAGACTTTATTAGTGAACCTAAGGAAGCTAATGTTGATTATCAATTGGATGCACCTGAGAATGATGAAGAATATGATGTACAATCTGATGATGAATTGGAGGATGATGAGCAAACCCTTGAGGAAGATGAGGCTCTTATAACTGAAGGTGAAAGGCAAGAGGAATTGGCAGCTTTGCGTGATGAAATGGATCTTCCAATTGAGGAGTTACTCAAACGTTATGCTGGAGAGAAAGGAGAATCAGTAACGCAAGAAAGTAGTCCAGAGCACAGTGAAGATGGTGGCAAAATAGTTAGAGCTGGTGATGGTGATGTTAAGGAAGGACTAGCATCAGAAAATGGAGATGATCTTTTATCTATCAGCCAAATTGGCACAGGCAACTCCAGCATGGTCCCTGGTCGACGTTGTGATGAAATTAATGGTGTCGTAGCAACGCCTGCAAGCAATGTATCTCAATATGAGGATTGTGAACCGGAAAATTTAAAAGAGGTTCCCAGTGAGACTGTCAATGAAAATTTTGCATATGATTTTACTGATGAAAAGGAAGATGGTGACTTTTTGCTTGGCGCAGAAGATAAGGATGATGAAACAACCTTATCCGAGGAGGAAAAACTGGATAGAGTTGATGCAATTGATTCCAAGGATGAGATTGCACTATTACAAAAGGAGAGTGACATGCCTATTGAGGATCTGCTTGCGAGGTATAAAAAGGATGTGAGTGATGATGAAGACGAAGAAGATGGATCAGATTATGCTTCTGCGTTATCAGAGGACCATTGTGATTCTCCAGTCCATGAAGATCCTGGGCAGATGGATCCTGCTGTATCTATGGATGAAGATATTAAGTCTGGTGAGCACCTGGCTGCTGTACAGTCGCAGGAAGAACAGTGGGAAGCACCTCATGAAAATTTGGAAGAAAGAGAAAGTGAGTATATAATTGCTGATGCAGCGGCTGCTGCAAGATCAGCACAACCAACTGGAAATACTTTCTCCACAACTAAAGTGCGTACAAAGTTTCCTTTTCTACTCAAGTACTCTCTTCGTGAGTATCAACACATTGGATTGGATTGGCTTGTCACGATGTATGAAAAAAGACTGAACGGAATTTTGGCAGATGAAATGGGGCTTGGAAAAACAATTATGACTATAGCCTTGCTTGCACATCTTGCTTGTGAAAAAGGGATTTGGGGTCCGCATCTAATTGTGGTACCAACTAGTGTAATGCTAAACTGGGAGACTGAATTTCTTAAATGGTGTCCTGCTTTTAAAATTTTGACTTATTTTGGAAGTGCAAAAGAGCGAAAACTTAAAAGACAAGGATGGTTGAAACCAAACTCATTTCATGTATGCATAACAACTTATAGATTAGTTATTCAGGATTCCAAAGTTTTCAAGCGCAAAAAGTGGAAGTACTTGATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAGTCACAAAGGTGGCAGACACTGTTGAATTTCAATTCGAAACGACGGATTCTCCTGACTGGAACACCACTGCAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTGATGCCCCATGTTTTCCAGTCACATCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGTTATGGTAGAGGGAGAGGAAAAGGTTAATAAGGAGGTTGTTGATCGTCTGCATAATGTCCTTCGTCCATTCTTACTCCGTCGATTAAAGCGAGATGTAGAGAAGCAACTTCCAATGAAACATGAGCATGTCATATACTGTAGACTGTCAAAGAGGCAGCGGAATTTGTATGAAGATTTCATTGCTAGCTCAGAGACGCAAGCCACTCTTGCAAGCGCCAATTTTTTTGGGATGATTAGTATTATCATGCAACTTCGTAAGGTTTGCAATCATCCTGACCTATTTGAGGGTCGTCCTATTGTCAGTTCTTTTGATATGTGTGGTATTGATATTCAGTTAAGTTCTTCTGTTTGCTCCGTGCTTCTGCCTAGTTCCTTTTCAACAGTGGACCTAAGAGGTCTCGGTCTTCTATTTACTCATCTTGACTATAGTATGACTGCTTGGGAGAGTGATGAAGTTCAAGCTATTGAGACCCCTGCATCTTTAATCATGGAACGTACTGATATAGCTCACCTAGAAGTAATTAGGCCTGGACTGAAATGTCAAAAAAAGCTGCAAGGAACAAATATTTTTGAAGAGATTCAAAGGGCAATTTGGGAAGAGAGGCTAAGAGAGGCAAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGGTGTAAGAAAAGACCCATGTACTCAACGACCCTAAGGGATCTTGTTACCATAAGGCATCCTGTATATGATATTCATCAGGTGAAGGCAAACCCTATTTCATATTTGTACTCATCAAAGCTAGCTGACATTGTTCTCTCCCCGGTTGAACGATTTCGAAGGATGACTGATGTGGTTGAAAGTTTCATGTTTGCAATTCCAGCTGCACGAGCACCCTTTCCAGTTTGCTGGTGCAGTAGAAGTGAAACAACTGTGTTTCTGCACCCATCATACAAGCAGAAATGCTCAGATGTTCTTTCACCGCTACTGTCTCCAATTAGGCCTGCAATTGTCCGCCGGCAAGTGTATTTCCCAGATAGGCGTCTTATACAATTTGACTGTGGGAAACTGCAGGAGCTAGCAATTTTGTTGAGGAAATTAAAATCAGAAGGCCACCGAGCCTTGATATTTACCCAGATGACAAAGATGCTTGACATATTAGAGGCATTCATTAATTTGTATGGTTATACTTACATGCGCTTAGATGGATCAACCCAACCGGAGGAGAGGCAGACCTTGATGCAGCGTTTTAACACAAACCCCAAATATTTTCTTTTCATCTTGTCAACCCGTAGCGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACGGTTATTTTTTATGATAGCGACTGGAATCCTGCTATGGATCAGCAGGCTCAAGATAGGTGCCACAGAATTGGTCAGACACGAGAAGTTCATATATATAGATTGATTAGTGAAAGCACCATTGAGGAGAACATTTTGAAGAAAGCAAACCAGAAGCGAGCACTTGATGATCTAGTTATACAAAGTGGGGGTTATAATACTGAGTTCTTCAAGAAGCTTGATCCTATGGAACTATTTTCAGGTCATAGAACACTTCCAATAAAAAATATGCCAAAGGAGAAAAACCAGAACAATGGAGAAGTTTCTGTTACTAATGCGGATGTAGAGGCTGCATTAAAAGATGTAGAAGACGAAGCAGATTATATGGCTTTGAAGAAAGTTGAACTGGAAGAAGCTGTGGACAACCAGGAGTTTACTGAAGAAGCCATGGGGAGACTTGAAGAGGATGAGTATGTAAATGAAGATGATGAGCCTGCTGAATTAGTTGAATCTGTTCCCAATTTAAGTAAAGAGAACGTGTTAATGTTAAATGGAAATGACCCAAAGGAAGATAGACCACCCTCTGTTGCTGCCAAAGAAGATGATATTGACATGCTAGCTGATGTCAAACAGATGGCTGCAGCTGCAGCTGCTGCTGGACAAGCTATCTCAGCCTTTGAGAATGAGCTACGCCCTATTGATCGATATGCCATTCGTTTTCTGGAGCTGTGGGATCCTATTATAGATAAAACTGCCTTGGAATCTGAAGTCAGGATTGAGGACACAGAATGGGAGTTGGATCGCATTGAAAAGTATAAGGAGGAGATGGAAGCCGAAATTGATGAAGATGAGGAACCTCTTGTATATGAAAGCTGGGATGCTGATTTTGCAACTGAGGCATATCGACAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTTGAATATGAAGCTAAACAGAAAGAGGAAGCTGAGGAAGAAAATTGTGATTCTAAAAAGACTCAACCAAGTGATTCGAAGCCCAAACCTAAAAAGAAACCCAAGAAAGCAAAGTTCAAATCTCTGAAAAAAGGATCTTTAACCTCTGGCTTGAGACCTTTCAAAGAAGATCCACAAGCAGAGTCAATGACCATAGATGATGAGGATGTCACTAGTCTGGATTTTGTCTCTCCAAATTCAATTATGCACAAAAAACGTAAGAAGTCTAAATTAACTACTGATGGTGAAGAAGAAAAAAGACTCACGAAGTCCAAAAAAGCCAAGAGGGATCCTCTGGACATTTGTACATCAGATTTAGAATACAATTCGTTAGTTGTGCTTGATGAACATGCAGAATCAAAGCAACGCGAAAATATGGTTGACTTTGAACAGAAAACAGGTAGCAGGAGTAAGTTGGGAGGAAAAATATCCATAACTCCAATGCCCGTGAAACGGATCTTGATGATAAAACCTGAAAAATTGAAGAAGGGAAGTCTTTGGTCCAAAGATTGTATTCCACCAGCTGATTTTTGGCTGCCTCATGAGGATGCAATATTATGTGCAGTTGTTCATGAATATGGTCCTAACTGGAGTTTGGTTAGCGAAATGCTTTATGGTATGACTGCTGGTGGGTCATACAGGGGGAGATATCGTCATCCTGTCCATTGCTGTGAGAGATTCAGAGAACTATTCCAGAAATATGTCTTGTTCTCGATGGACAATACAAATCATGAGAAGATCAACAGTACTGGCTCTGGCAAGGCTCTTCTTAAAGTTACAGAGGATAACATTCGGATGTTGTTAGATGTTGCTTCTGAGCAGGGAAATAAAGAGTTACTACTGCAGAAGCATTTTTTTGCATTGCTTTCATCTGGCTGGAAGGTGGCATCACATGTTGACCGCCGGCAAAATCCATCGCCTACCTCTAATGGTGTCTATTTCGATCAGAGTTTCTTTACCTCCATTGGCCAGCATTCACAGAATTCCATGAAGAAACCCTCTGAAAGGATGACATTTGCTAATTTGACTCAGAGCAAGAAATTAGTAGCAGCTGCACTTGATGACACCAGAAGTAGACAGGAGAATGACAAAATCTTGCTCTCTAAGCAGGGTGAAAACATGCAAGTGAGTGCAGATCAGCTGGATATAACACTGGAGCTCCAGAAAGCGGAGAGTGATGCCTTATCTTCATTTCCATCTGTTATAAATATATCAATATATGGGGCTGAACCAATACCATCTTTAAATAAGCAAACAGGAGAAGATGATCATCTTAAAGTTTGTTCGTCTGGTGCTGAGAATCGTTTCAGGGAGGCAACCAGAGCTTGTGAAGACGACAGTTCTGGATGGGCTTCATCAGCATTCCCAACAAACGATTCACAGTCTCGACCTGGATCCAGGATACAATCTTCTGGAAAGCAAAAGTCTTCCATCTCTGAGTCTACTAAACCTTCTAGGTCGAAGTCCAAAAGAGCTTCAATGGATCCTAGTGAAATGCATTACCAACAGGGTGAGCAATTATTCCAGTCAATGCTACCACAGGAACTGAGATTTGATTTTAATTCATCCACTATGGATGGAGCTGGAATTGATGATATGGATAGCAATCTCCCCTTTGATTTGAATGTGGAAAGTACCTTGGAAATGGAGAGTTTTGGAGTGGTCCCACATGATTACATAGCTGGTTTGGTCTCAGGCCTTGATGATTGGAATGCATTCCCTGAATATACTGACATTAGATAG 6156 0.412 MASKGPRSKIDHETRAKRQRALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMLDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDTYKPAEKIPAEYDMSIQYKDVHGDFISEPKEANVDYQLDAPENDEEYDVQSDDELEDDEQTLEEDEALITEGERQEELAALRDEMDLPIEELLKRYAGEKGESVTQESSPEHSEDGGKIVRAGDGDVKEGLASENGDDLLSISQIGTGNSSMVPGRRCDEINGVVATPASNVSQYEDCEPENLKEVPSETVNENFAYDFTDEKEDGDFLLGAEDKDDETTLSEEEKLDRVDAIDSKDEIALLQKESDMPIEDLLARYKKDVSDDEDEEDGSDYASALSEDHCDSPVHEDPGQMDPAVSMDEDIKSGEHLAAVQSQEEQWEAPHENLEERESEYIIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISVMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMCGIDIQLSSSVCSVLLPSSFSTVDLRGLGLLFTHLDYSMTAWESDEVQAIETPASLIMERTDIAHLEVIRPGLKCQKKLQGTNIFEEIQRAIWEERLREAKERAAAIAWWNSLRCKKRPMYSTTLRDLVTIRHPVYDIHQVKANPISYLYSSKLADIVLSPVERFRRMTDVVESFMFAIPAARAPFPVCWCSRSETTVFLHPSYKQKCSDVLSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLPIKNMPKEKNQNNGEVSVTNADVEAALKDVEDEADYMALKKVELEEAVDNQEFTEEAMGRLEEDEYVNEDDEPAELVESVPNLSKENVLMLNGNDPKEDRPPSVAAKEDDIDMLADVKQMAAAAAAAGQAISAFENELRPIDRYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYESWDADFATEAYRQQVEALAQHQLMEELEYEAKQKEEAEEENCDSKKTQPSDSKPKPKKKPKKAKFKSLKKGSLTSGLRPFKEDPQAESMTIDDEDVTSLDFVSPNSIMHKKRKKSKLTTDGEEEKRLTKSKKAKRDPLDICTSDLEYNSLVVLDEHAESKQRENMVDFEQKTGSRSKLGGKISITPMPVKRILMIKPEKLKKGSLWSKDCIPPADFWLPHEDAILCAVVHEYGPNWSLVSEMLYGMTAGGSYRGRYRHPVHCCERFRELFQKYVLFSMDNTNHEKINSTGSGKALLKVTEDNIRMLLDVASEQGNKELLLQKHFFALLSSGWKVASHVDRRQNPSPTSNGVYFDQSFFTSIGQHSQNSMKKPSERMTFANLTQSKKLVAAALDDTRSRQENDKILLSKQGENMQVSADQLDITLELQKAESDALSSFPSVINISIYGAEPIPSLNKQTGEDDHLKVCSSGAENRFREATRACEDDSSGWASSAFPTNDSQSRPGSRIQSSGKQKSSISESTKPSRSKSKRASMDPSEMHYQQGEQLFQSMLPQELRFDFNSSTMDGAGIDDMDSNLPFDLNVESTLEMESFGVVPHDYIAGLVSGLDDWNAFPEYTDIR 2051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2464g00013 2051 SMART bromneu2 23 94 IPR014012 -
Gabi2464g00013 2051 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 1032 1281 - -
Gabi2464g00013 2051 SMART helicmild6 1091 1174 IPR001650 -
Gabi2464g00013 2051 Pfam Helicase conserved C-terminal domain 1064 1174 IPR001650 -
Gabi2464g00013 2051 ProSiteProfiles Myb-like domain profile. 1649 1702 IPR001005 -
Gabi2464g00013 2051 MobiDBLite consensus disorder prediction 180 213 - -
Gabi2464g00013 2051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 744 1244 IPR027417 -
Gabi2464g00013 2051 SUPERFAMILY Homeodomain-like 1647 1704 IPR009057 -
Gabi2464g00013 2051 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 766 831 - -
Gabi2464g00013 2051 MobiDBLite consensus disorder prediction 189 213 - -
Gabi2464g00013 2051 MobiDBLite consensus disorder prediction 1 33 - -
Gabi2464g00013 2051 MobiDBLite consensus disorder prediction 288 302 - -
Gabi2464g00013 2051 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1065 1215 IPR001650 -
Gabi2464g00013 2051 MobiDBLite consensus disorder prediction 1547 1565 - -
Gabi2464g00013 2051 Gene3D - 766 844 - -
Gabi2464g00013 2051 Gene3D - 1031 1280 IPR027417 -
Gabi2464g00013 2051 MobiDBLite consensus disorder prediction 249 306 - -
Gabi2464g00013 2051 MobiDBLite consensus disorder prediction 1917 1954 - -
Gabi2464g00013 2051 CDD DEXQc_SRCAP 520 742 - -
Gabi2464g00013 2051 Pfam SNF2-related domain 537 809 IPR000330 GO:0005524|GO:0140658
Gabi2464g00013 2051 Coils Coil 206 226 - -
Gabi2464g00013 2051 CDD SF2_C_SNF 1050 1185 - -
Gabi2464g00013 2051 Pfam HSA domain 27 93 IPR014012 -
Gabi2464g00013 2051 Gene3D - 488 765 IPR038718 -
Gabi2464g00013 2051 Coils Coil 1401 1421 - -
Gabi2464g00013 2051 PANTHER HELICASE SRCAP-RELATED 15 1950 - -
Gabi2464g00013 2051 SMART ultradead3 516 709 IPR014001 -
Gabi2464g00013 2051 FunFam Photoperiod independent early flowering protein 1645 1706 - -
Gabi2464g00013 2051 Coils Coil 1452 1472 - -
Gabi2464g00013 2051 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Gabi2464g00013 2051 Coils Coil 1261 1298 - -
Gabi2464g00013 2051 MobiDBLite consensus disorder prediction 1910 1971 - -
Gabi2464g00013 2051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 472 742 IPR027417 -
Gabi2464g00013 2051 FunFam Photoperiod-independent early flowering 1 490 765 - -
Gabi2464g00013 2051 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 532 697 IPR014001 -
Gabi2464g00013 2051 MobiDBLite consensus disorder prediction 409 449 - -
Gabi2464g00013 2051 MobiDBLite consensus disorder prediction 1463 1565 - -
Gabi2464g00013 2051 Gene3D - 1645 1706 - -
Gabi2464g00013 2051 MobiDBLite consensus disorder prediction 249 284 - -
Gabi2464g00013 2051 MobiDBLite consensus disorder prediction 1463 1486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2464g00013 Gabi-Chr2464 252037 290194 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2464g00013 540 812 RAD5 or RAD16-like Gene Family AT5G43530 30.124 2.46e-28 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi2464g00013 SNF2_N 9e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2464g00013 K11661 - gmx:100794898 3372.79