Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2464g00012 ATGGATGTCCGCAAGCGAGGAAGGCCTGAAGCTGGTTTCAACAATAATGGCTTCGTTAAGAAGACCAAGCAAGAAATGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGATGCCCATTTGGTGAGAGCTGCCACTTCTTGCATTATATTCCTGGAGGTTTTAATGCTGTTGCCCAGAGGATGAATGCAAAACCTGCGCCACCTCCATCTAGAAATGTTGCTGCACCACCACCTCTTCCTAATGGGTCTGCACCACCTGGGGTTAAAACCCGTGTATGTAACAAGTTCAATACTGCTGAAGGCTGCAAATTTGGTGACAAGTGCCATTTTGCCCATGGTGAATGGGAACTTGGCAAACCTATTGCTCCATCAATTGATGATCGTCGTCCCATGGGACCTACAGCCACTGGTCGTATGGGTGGCCGAATGGATGCTGCTCCTCCTGGTCGGGCTGCTAGCTTTGGTGCTAATTCCACTGCCAAGATCAGTGTAGAAGCTTCCCTTGCTGGAGCTATCATTGGGAAGGGTGGTGTGAACTCAAAGCAGATCTGTCGCCAAACAGGTGCCAAACTTTCAATCCGAGAACATGAATCTGATCCAAATCTTAGAAACATTGAACTTGAGGGAAGCTTTGAACAAATTGAACAAGCAAGTAACATGGTTAAAGATTTACTTGTGACTCTGTCAATGTCTGCCCCACCTAAATCCACCCCAGGTTTTCCTGGTGCCCCAGCATCTCGTGGAAGCAACTTCAAGACCAAGCTGTGTGAGAATTTTACAAAAGGATCTTGCACCTTTGGAGAAAGATGTCACTTTGCACATGGAGCTGCTGAATTGCGCAAGTCAGGAGTATGA 888 0.4707 MDVRKRGRPEAGFNNNGFVKKTKQEMESLSTGVGSKSKPCTKFFSTAGCPFGESCHFLHYIPGGFNAVAQRMNAKPAPPPSRNVAAPPPLPNGSAPPGVKTRVCNKFNTAEGCKFGDKCHFAHGEWELGKPIAPSIDDRRPMGPTATGRMGGRMDAAPPGRAASFGANSTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIEQASNMVKDLLVTLSMSAPPKSTPGFPGAPASRGSNFKTKLCENFTKGSCTFGERCHFAHGAAELRKSGV 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2464g00012 295 FunFam Zinc finger CCCH domain-containing protein 256 292 - -
Gabi2464g00012 295 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 159 237 IPR036612 GO:0003723
Gabi2464g00012 295 PANTHER CCCH ZINC FINGER/TIS11-RELATED 24 159 IPR045877 GO:0003729
Gabi2464g00012 295 SMART kh_6 167 237 IPR004087 GO:0003676
Gabi2464g00012 295 MobiDBLite consensus disorder prediction 1 22 - -
Gabi2464g00012 295 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Gabi2464g00012 295 Pfam KH domain 171 233 IPR004088 GO:0003723
Gabi2464g00012 295 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Gabi2464g00012 295 MobiDBLite consensus disorder prediction 80 95 - -
Gabi2464g00012 295 Gene3D K Homology domain, type 1 164 259 IPR036612 GO:0003723
Gabi2464g00012 295 SUPERFAMILY CCCH zinc finger 35 61 IPR036855 GO:0046872
Gabi2464g00012 295 ProSiteProfiles Type-1 KH domain profile. 168 232 - -
Gabi2464g00012 295 Gene3D - 260 293 - -
Gabi2464g00012 295 Gene3D - 94 130 - -
Gabi2464g00012 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 286 IPR000571 GO:0046872
Gabi2464g00012 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 125 IPR000571 GO:0046872
Gabi2464g00012 295 ProSiteProfiles Zinc finger C3H1-type profile. 261 288 IPR000571 GO:0046872
Gabi2464g00012 295 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Gabi2464g00012 295 SMART c3hfinal6 261 287 IPR000571 GO:0046872
Gabi2464g00012 295 SMART c3hfinal6 98 125 IPR000571 GO:0046872
Gabi2464g00012 295 FunFam Zinc finger CCCH domain-containing protein 93 130 - -
Gabi2464g00012 295 SUPERFAMILY CCCH zinc finger 98 129 IPR036855 GO:0046872
Gabi2464g00012 295 CDD KH-I_AtC3H36_like 171 236 - -
Gabi2464g00012 295 MobiDBLite consensus disorder prediction 72 98 - -
Gabi2464g00012 295 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Gabi2464g00012 295 SUPERFAMILY CCCH zinc finger 260 291 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2464g00012 Gabi-Chr2464 224606 228941 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2464g00012 35 133 C3H Transcription Factor Family AT1G68200 28.283 1.96e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi2464g00012 KH_1 1.6e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2464g00012 - - gmx:100803981 511.531