Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2464g00011 ATGGATGTCCGCAAGCGAGGAAGGCCTGAAGCTGGTTTCAACAATAATGGCTTCGTTAAGAAGACCAAGCAAGAAATGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGATGCCCATTTGGTGAGAGCTGCCACTTCTTGCATTATATTCCTGGAGGTTTTAATGCTGTTGCCCAGAGGATGAATGCAAAACCTGCGCCACCTCCATCTAGAAATGTTGCTGCACCACCACCTCTTCCTAATGGGTCTGCACCACCTGGGGTTAAAACCCCCACTGGTCGTATGGGTGGCCGAATGGATGCTGCTCCTCCTGGTCGGGCTGCTAGCTTTGGTGCTAATTCCACTGCCAAGATCAGTGTAGAAGCTTCCCTTGCTGGAGCTATCATTGGGAAGGGTGGTGTGAACTCAAAGCAGATCTGTCGCCAAACAGGTGCCAAACTTTCAATCCGAGAACATGAATCTGATCCAAATCTTAGAAACATTGAACTTGAGGGAAGCTTTGAACAAATTGAACAAGCAAGTAACATGGTTAAAGATTTACTTGTGACTCTGTCAATGTCTGCCCCACCTAAATCCACCCCAGGTTTTCCTGGTGCCCCAGCATCTCGTGGAAGCAACTTCAAGACCAAGCTGTGTGAGAATTTTACAAAAGGATCTTGCACCTTTGGAGAAAGATGTCACTTTGCACATGGAGCTGCTGAATTGCGCAAGTCAGGAGTATGA 756 0.4735 MDVRKRGRPEAGFNNNGFVKKTKQEMESLSTGVGSKSKPCTKFFSTAGCPFGESCHFLHYIPGGFNAVAQRMNAKPAPPPSRNVAAPPPLPNGSAPPGVKTPTGRMGGRMDAAPPGRAASFGANSTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIEQASNMVKDLLVTLSMSAPPKSTPGFPGAPASRGSNFKTKLCENFTKGSCTFGERCHFAHGAAELRKSGV 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2464g00011 251 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Gabi2464g00011 251 SMART c3hfinal6 217 243 IPR000571 GO:0046872
Gabi2464g00011 251 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 218 242 IPR000571 GO:0046872
Gabi2464g00011 251 PANTHER CCCH ZINC FINGER/TIS11-RELATED 24 248 IPR045877 GO:0003729
Gabi2464g00011 251 MobiDBLite consensus disorder prediction 1 22 - -
Gabi2464g00011 251 Gene3D K Homology domain, type 1 120 215 IPR036612 GO:0003723
Gabi2464g00011 251 SUPERFAMILY CCCH zinc finger 216 247 IPR036855 GO:0046872
Gabi2464g00011 251 ProSiteProfiles Type-1 KH domain profile. 124 188 - -
Gabi2464g00011 251 FunFam Zinc finger CCCH domain-containing protein 212 248 - -
Gabi2464g00011 251 ProSiteProfiles Zinc finger C3H1-type profile. 217 244 IPR000571 GO:0046872
Gabi2464g00011 251 SUPERFAMILY CCCH zinc finger 35 61 IPR036855 GO:0046872
Gabi2464g00011 251 MobiDBLite consensus disorder prediction 80 96 - -
Gabi2464g00011 251 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Gabi2464g00011 251 SMART kh_6 123 193 IPR004087 GO:0003676
Gabi2464g00011 251 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 115 193 IPR036612 GO:0003723
Gabi2464g00011 251 CDD KH-I_AtC3H36_like 127 192 - -
Gabi2464g00011 251 Gene3D - 216 249 - -
Gabi2464g00011 251 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Gabi2464g00011 251 Pfam KH domain 127 189 IPR004088 GO:0003723
Gabi2464g00011 251 MobiDBLite consensus disorder prediction 72 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2464g00011 Gabi-Chr2464 224606 228941 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi2464g00011 KH_1 1.2e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2464g00011 - - lja:Lj5g3v0921030.1 321.242