Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi2464g00010 | ATGGATGTCCGCAAGCGAGGAAGGCCTGAAGCTGGTTTCAACAATAATGGCTTCGTTAAGAAGACCAAGCAAGAAATGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGATGCCCATTTGGTGAGAGCTGCCACTTCTTGCATTATATTCCTGGAGGTTTTAATGCTGTTGCCCAGAGGATGAATGCAAAACCTGCGCCACCTCCATCTAGAAATGTCATGGGACCTACAGCCACTGGTCGTATGGGTGGCCGAATGGATGCTGCTCCTCCTGGTCGGGCTGCTAGCTTTGGTGCTAATTCCACTGCCAAGATCAGTGTAGAAGCTTCCCTTGCTGGAGCTATCATTGGGAAGGGTGGTGTGAACTCAAAGCAGATCTGTCGCCAAACAGGTGCCAAACTTTCAATCCGAGAACATGAATCTGATCCAAATCTTAGAAACATTGAACTTGAGGGAAGCTTTGAACAAATTGAACAAGCAAGTAACATGGTTAAAGATTTACTTGTGACTCTGTCAATGTCTGCCCCACCTAAATCCACCCCAGGTTTTCCTGGTGCCCCAGCATCTCGTGGAAGCAACTTCAAGACCAAGCTGTGTGAGAATTTTACAAAAGGATCTTGCACCTTTGGAGAAAGATGTCACTTTGCACATGGAGCTGCTGAATTGCGCAAGTCAGGAGTATGA | 717 | 0.4686 | MDVRKRGRPEAGFNNNGFVKKTKQEMESLSTGVGSKSKPCTKFFSTAGCPFGESCHFLHYIPGGFNAVAQRMNAKPAPPPSRNVMGPTATGRMGGRMDAAPPGRAASFGANSTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIEQASNMVKDLLVTLSMSAPPKSTPGFPGAPASRGSNFKTKLCENFTKGSCTFGERCHFAHGAAELRKSGV | 238 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi2464g00010 | 238 | SUPERFAMILY | CCCH zinc finger | 35 | 61 | IPR036855 | GO:0046872 | |
| Gabi2464g00010 | 238 | Pfam | RNA-binding, Nab2-type zinc finger | 39 | 59 | - | - | |
| Gabi2464g00010 | 238 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Gabi2464g00010 | 238 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 102 | 180 | IPR036612 | GO:0003723 | |
| Gabi2464g00010 | 238 | FunFam | Zinc finger CCCH domain-containing protein | 199 | 235 | - | - | |
| Gabi2464g00010 | 238 | SMART | kh_6 | 110 | 180 | IPR004087 | GO:0003676 | |
| Gabi2464g00010 | 238 | ProSiteProfiles | Zinc finger C3H1-type profile. | 204 | 231 | IPR000571 | GO:0046872 | |
| Gabi2464g00010 | 238 | Pfam | KH domain | 114 | 176 | IPR004088 | GO:0003723 | |
| Gabi2464g00010 | 238 | SUPERFAMILY | CCCH zinc finger | 203 | 234 | IPR036855 | GO:0046872 | |
| Gabi2464g00010 | 238 | CDD | KH-I_AtC3H36_like | 114 | 179 | - | - | |
| Gabi2464g00010 | 238 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 205 | 229 | IPR000571 | GO:0046872 | |
| Gabi2464g00010 | 238 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 143 | 235 | IPR045877 | GO:0003729 | |
| Gabi2464g00010 | 238 | Gene3D | K Homology domain, type 1 | 107 | 202 | IPR036612 | GO:0003723 | |
| Gabi2464g00010 | 238 | Gene3D | - | 203 | 236 | - | - | |
| Gabi2464g00010 | 238 | ProSiteProfiles | Zinc finger C3H1-type profile. | 34 | 62 | IPR000571 | GO:0046872 | |
| Gabi2464g00010 | 238 | ProSiteProfiles | Type-1 KH domain profile. | 111 | 175 | - | - | |
| Gabi2464g00010 | 238 | SMART | c3hfinal6 | 34 | 61 | IPR000571 | GO:0046872 | |
| Gabi2464g00010 | 238 | SMART | c3hfinal6 | 204 | 230 | IPR000571 | GO:0046872 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi2464g00010 | Gabi-Chr2464 | 224606 | 228941 | Tandem |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Gabi2464g00010 | KH_1 | 1.1e-12 | CL0007 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi2464g00010 | - | - | thj:104799299 | 327.791 |