Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2464g00009 ATGAATGCAAAACCTGCGCCACCTCCATCTAGAAATGTTGCTGCACCACCACCTCTTCCTAATGGGTCTGCACCACCTGGGGTTAAAACCCGTGTATGTAACAAGTTCAATACTGCTGAAGGCTGCAAATTTGGTGACAAGTGCCATTTTGCCCATGGTGAATGGGAACTTGGCAAACCTATTGCTCCATCAATTGATGATCGTCGTCCCATGGGACCTACAGCCACTGGTCGTATGGGTGGCCGAATGGATGCTGCTCCTCCTGGTCGGGCTGCTAGCTTTGGTGCTAATTCCACTGCCAAGATCAGTGTAGAAGCTTCCCTTGCTGGAGCTATCATTGGGAAGGGTGGTGTGAACTCAAAGCAGATCTGTCGCCAAACAGGTGCCAAACTTTCAATCCGAGAACATGAATCTGATCCAAATCTTAGAAACATTGAACTTGAGGGAAGCTTTGAACAAATTGAACAAGCAAGTAACATGGTTAAAGATTTACTTGTGACTCTGTCAATGTCTGCCCCACCTAAATCCACCCCAGGTTTTCCTGGTGCCCCAGCATCTCGTGGAAGCAACTTCAAGACCAAGCTGTGTGAGAATTTTACAAAAGGATCTTGCACCTTTGGAGAAAGATGTCACTTTGCACATGGAGCTGCTGAATTGCGCAAGTCAGGAGTATGA 675 0.4726 MNAKPAPPPSRNVAAPPPLPNGSAPPGVKTRVCNKFNTAEGCKFGDKCHFAHGEWELGKPIAPSIDDRRPMGPTATGRMGGRMDAAPPGRAASFGANSTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIEQASNMVKDLLVTLSMSAPPKSTPGFPGAPASRGSNFKTKLCENFTKGSCTFGERCHFAHGAAELRKSGV 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2464g00009 224 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 191 215 IPR000571 GO:0046872
Gabi2464g00009 224 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 29 54 IPR000571 GO:0046872
Gabi2464g00009 224 ProSiteProfiles Zinc finger C3H1-type profile. 190 217 IPR000571 GO:0046872
Gabi2464g00009 224 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 88 167 IPR036612 GO:0003723
Gabi2464g00009 224 CDD KH-I_AtC3H36_like 100 165 - -
Gabi2464g00009 224 SUPERFAMILY CCCH zinc finger 27 58 IPR036855 GO:0046872
Gabi2464g00009 224 MobiDBLite consensus disorder prediction 1 29 - -
Gabi2464g00009 224 FunFam Zinc finger CCCH domain-containing protein 22 59 - -
Gabi2464g00009 224 Gene3D K Homology domain, type 1 93 188 IPR036612 GO:0003723
Gabi2464g00009 224 FunFam Zinc finger CCCH domain-containing protein 185 221 - -
Gabi2464g00009 224 SUPERFAMILY CCCH zinc finger 189 220 IPR036855 GO:0046872
Gabi2464g00009 224 PANTHER CCCH ZINC FINGER/TIS11-RELATED 169 221 IPR045877 GO:0003729
Gabi2464g00009 224 Gene3D - 23 59 - -
Gabi2464g00009 224 Gene3D - 189 222 - -
Gabi2464g00009 224 Pfam KH domain 100 162 IPR004088 GO:0003723
Gabi2464g00009 224 ProSiteProfiles Zinc finger C3H1-type profile. 27 55 IPR000571 GO:0046872
Gabi2464g00009 224 ProSiteProfiles Type-1 KH domain profile. 97 161 - -
Gabi2464g00009 224 SMART kh_6 96 166 IPR004087 GO:0003676
Gabi2464g00009 224 MobiDBLite consensus disorder prediction 1 24 - -
Gabi2464g00009 224 SMART c3hfinal6 27 54 IPR000571 GO:0046872
Gabi2464g00009 224 SMART c3hfinal6 190 216 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2464g00009 Gabi-Chr2464 224606 228941 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi2464g00009 KH_1 9.7e-13 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2464g00009 - - gmx:100803981 387.882