Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2464g00006 ATGTATTCCAAGTATAATTTTATTAAGGATCTTAATCCTACTAAGGAGGAGTGGAGGATTGAGGCTAGAGTTGTTAGAACATGGAAGGTTCCTAATTTTCAGCAAAAACATTTTGACGACAACGTAGAGATGATTCTGTTAGATGAAAAGGGTGGAAGGGTCCATGCTGCTGTCAAGGGTTCTTTGCATATCCGTAAAAAAATTCACGAAGGAGAAGTTTATTTCATAAAATTTTTTGGAGTTGGTTTGAATAGTGGTAGTTTCAGGCCAACTAAGCATGATTATCGTTTGTCTTTCAACTTGAGGACTGATGTAAAATCCACTATTGATTCTGCTATTCCCACCAATGGATTTGATTTTGTAGATTTTGACGTTATAAAGAAAGAGTCTTCTGATTCCCCTTATTTAGTAGATGTCATCGGTTTAGTTTCTGGAATAGGGGAAGTTCGTAAGCATATTATCTCCGGTAGGAAGACAAAAATGGTAGTCGTGGAGCTTGATAATCTCAGGCTTTCGTCTGATGTCATTGATAGCGTTTACACATTGTCTCAGTTATCAAGTCAGTCCTCATATTCTTTTGAGAATGATTTCCTGAAAGAGACGAAAAGGAAGTGTATCAGTGATGTTAAGAATTGCAGTGAGGTTACTACTTGCATTACTTATCGAACCATAAAATTGATTGAGAGCAAATATAATTGGTGGTACAAGTCCTGTAATAAATGTCCATATTCTGTTTGTGAAGATTTCGAGAAATGGTATTGTAAAAACTGCCAAAAACATTTGGATGATTATTATCCAAAATTTTGTGTGCAGTTGAGAGTTGTGGATCACACTGATTCTGCATCTTTCATTCTGTTTGATAGAGATTGTGTCGCTTTGTTGGGCATGAGTGCTGCGGATTTACGTGAGCAGCATTTCAAAAGGGGTGTTGATTTGGAGCACTATCCTAAGGAACTTAATGTTCTTATTGATAAATCCATGATGAAAGATTATTTGACAAGGCTTGCGACAGTGCCGTTGCATCAGCAGAACCAGAAAGATAGTCCTAATACTGGACTTGACATTGATAACTTGATTTCAGCTGAGATTCCTAACAAAGATTCCAATCCTTCACTTTTTGCAGCTGTCACGTGTTATATGATGCATGGACCCTGTGGTCCTGACAATTACAAGTCTCCTTGCATGAAGAACGGACATTGTTCAAAGAAATTTCCCAAGAAGTTCTGCTCCCGTACTTTTATTGATGATAATGGATTCCCTCGTTATAGAAGAAGAAATGATGGGAGTGTTGTCAAAAAGAACGGCGTTGAACTTGATAACTGTTATGTTGTGCCGTATGTGTCCGCATGTGAAGCTGCTTGGAGAATATTCGGATTTGAGATTCATTACAGATTCCCCCCTGTTCAGCGATTGCCATTTCACCTACCCAATGAAAAAAGCGTTGTTTTTAGTGATCATGCTTCAATAACCGATGTCAAGACTGGGGCGGAGTCTAGACAATCAATGTTCGAGTCTTGGATGGATGCAAATAAAAAATATCAAGAAGGTAGGAATCTTACTTATGCAGATTATGAAGATTTGAGAACGGTCAATGGGGTGCTTTTTCCTACATATAAGGATGTCTGTTATTCTTTGGGGCTTTTGGATGATGACAATGAGTACATTGATGCAATTAAGGAGGCAAGTTCTTGGGGGTCAGCAACTTATCTGAGAAATTTGTTTGCCTTATTGTTATTTGGTAACTCAATGAACAAGCCTGAAAATGTTTTCCAAAAATGCTGGGAATTACTATCTGACGATGTTCTTTATCGGCATAGGCAAAGAATTGGACGTGAAGATGATTTGCTTACAGAGGATTCTATAAAAAACATAACCCTTGCAGAAATCGATAAGGTGTTGCAAAGCAACAGTAAATGCCTCTCTGATTACCCATCCATGCCGAGCATCATCGATGAATCTTTATTGGATATGCAGAATAGATTGGTGATGGATGAATTTTTGTATGACAGATTCTCTTTGAAAGAAGAGCATGACAGACTACTGAATTCACTCACTGATGAGCAAAGGGTTGTTTATGACAAAATAATTTCAGCTGTTTCGGCAGGTAAAGGAGGATTTTTTTTCCTGTACGGCTTTGGTGGGACTGGAAAAACATTTATTTGGAACACTCTGTCAGCATTTGTTCGATCTCGAGCTGAAATAGTGCTTAATGTTGCTTCTAGCGGAATTGCTTCCCCTCTTCTTCCTGGAGGACGTACGATACATTCTAGATTTCGTATTCCTATACAGATCACCGAAGATTCAACATGTAATATAAAACAAAATTCTACTTTGGCAGAGTTGTTGTCAAAAACAAAGTTAATCATTTGGGATGAAGCACCGATGGTACACAAATTTTGCTTTGAGGCTCTTGATAGAACACTTAGAGATGTTCTTAGATTTAATGATACCAACTATGTTGATATGCCCTTTGGTGGAAAAGTTGTCGTTCTAGGAGGTGTCTTTCGGCAAATATTACATGTCATTCCAAATGGCAGTAGACAAGATATAGTTCATGAAACCATCAATTCTTCCTATCTATGGTCCCATTGTCATCTGTTATCTTTGACCAAGAACATGCGTCTCAATTCTGGAAGTAGCACTAATAATTTGTTGGAAATAAAAGAATTTTTTGAGTGGCTGCTTAAAATAGGAGATGGTGATCTTGGGGATGATGTTGATGGAGAATCTATTATAACAATTCCAGATGAATTGTTGATCAAAGGTACAGAAGACCCACTTTCAGATATTGTTGATTTTGTTTACCCGAATCTGATGGATAATATATTAGATCCTACTATCTTTAAAGAACGTGCTCTTCTGACTCCTAAATTGTCCGATGCTACCATGTTAAACGAGTACCTAATGGCTGTGATTCCGGGTGAAGAAAGGACATTTTTGAGTTCAGATAAGGTTTTGAAACAAGACGGTAATTCATCTCTTGAGGATGACGAAATCTCCCCTGATATCTTAAATACATTCTCATGTTCGGGGATTCCTGATCATAAATTAACTTTGAAGGTTAAAGTACCGGTGATGCTATTGAGAAATATTGATCAATCAAGAGGTTTATGCAACGGTACGAGATTACTTATTACAAAGTTGGAGAATCATGTTGTTGAGGCAATTGTTCTTACAGGAAACAAAATAGGAGATACTGTGTTAATCCCTAGAATGACGATCAGCCCATCGGGTCATACATTTCCAGTAAACTTCCAAAGAAGACAATTCCCCTTGGTAGTTTCGTTTGCGATGACTATCAACAAAAGTCAAGGACAGTCGCTGTCTCATGTTGGCATTTATCTTCCTAGGCCTGTCTTCACTCATGGGCAATCATATATGGCACTATCTAGAGTAAAGAGCAGACATGGATTGAAGATGCTGATACTTGATGAAAATGGTTGCGTTACAAATACTACCTTTAACATCGTCTACAAGGAAGTATTTCAAAGATTAGTGTAG 3501 0.3776 MYSKYNFIKDLNPTKEEWRIEARVVRTWKVPNFQQKHFDDNVEMILLDEKGGRVHAAVKGSLHIRKKIHEGEVYFIKFFGVGLNSGSFRPTKHDYRLSFNLRTDVKSTIDSAIPTNGFDFVDFDVIKKESSDSPYLVDVIGLVSGIGEVRKHIISGRKTKMVVVELDNLRLSSDVIDSVYTLSQLSSQSSYSFENDFLKETKRKCISDVKNCSEVTTCITYRTIKLIESKYNWWYKSCNKCPYSVCEDFEKWYCKNCQKHLDDYYPKFCVQLRVVDHTDSASFILFDRDCVALLGMSAADLREQHFKRGVDLEHYPKELNVLIDKSMMKDYLTRLATVPLHQQNQKDSPNTGLDIDNLISAEIPNKDSNPSLFAAVTCYMMHGPCGPDNYKSPCMKNGHCSKKFPKKFCSRTFIDDNGFPRYRRRNDGSVVKKNGVELDNCYVVPYVSACEAAWRIFGFEIHYRFPPVQRLPFHLPNEKSVVFSDHASITDVKTGAESRQSMFESWMDANKKYQEGRNLTYADYEDLRTVNGVLFPTYKDVCYSLGLLDDDNEYIDAIKEASSWGSATYLRNLFALLLFGNSMNKPENVFQKCWELLSDDVLYRHRQRIGREDDLLTEDSIKNITLAEIDKVLQSNSKCLSDYPSMPSIIDESLLDMQNRLVMDEFLYDRFSLKEEHDRLLNSLTDEQRVVYDKIISAVSAGKGGFFFLYGFGGTGKTFIWNTLSAFVRSRAEIVLNVASSGIASPLLPGGRTIHSRFRIPIQITEDSTCNIKQNSTLAELLSKTKLIIWDEAPMVHKFCFEALDRTLRDVLRFNDTNYVDMPFGGKVVVLGGVFRQILHVIPNGSRQDIVHETINSSYLWSHCHLLSLTKNMRLNSGSSTNNLLEIKEFFEWLLKIGDGDLGDDVDGESIITIPDELLIKGTEDPLSDIVDFVYPNLMDNILDPTIFKERALLTPKLSDATMLNEYLMAVIPGEERTFLSSDKVLKQDGNSSLEDDEISPDILNTFSCSGIPDHKLTLKVKVPVMLLRNIDQSRGLCNGTRLLITKLENHVVEAIVLTGNKIGDTVLIPRMTISPSGHTFPVNFQRRQFPLVVSFAMTINKSQGQSLSHVGIYLPRPVFTHGQSYMALSRVKSRHGLKMLILDENGCVTNTTFNIVYKEVFQRLV 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2464g00006 1166 CDD RPA1_DBD_C 206 326 IPR047192 -
Gabi2464g00006 1166 Gene3D - 112 176 IPR012340 -
Gabi2464g00006 1166 Pfam Domain of unknown function DUF223 43 134 IPR003871 -
Gabi2464g00006 1166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 625 874 IPR027417 -
Gabi2464g00006 1166 Gene3D - 6 110 IPR012340 -
Gabi2464g00006 1166 Pfam Replication factor-A C terminal domain 223 337 IPR013955 -
Gabi2464g00006 1166 CDD SF1_C_RecD 1095 1138 - -
Gabi2464g00006 1166 SUPERFAMILY Nucleic acid-binding proteins 201 331 IPR012340 -
Gabi2464g00006 1166 Gene3D - 187 346 IPR012340 -
Gabi2464g00006 1166 Gene3D - 680 866 IPR027417 -
Gabi2464g00006 1166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 819 1165 IPR027417 -
Gabi2464g00006 1166 SUPERFAMILY Nucleic acid-binding proteins 6 110 IPR012340 -
Gabi2464g00006 1166 PANTHER UNCHARACTERIZED 350 1141 - -
Gabi2464g00006 1166 Pfam PIF1-like helicase 684 1048 IPR010285 GO:0000723|GO:0003678|GO:0006281
Gabi2464g00006 1166 CDD RPA1_DBD_A_like 19 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2464g00006 Gabi-Chr2464 95702 102490 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2464g00006 11 146 Core DNA Replication Machinery Family AT5G08020 27.586 9.75e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2464g00006 - - egt:105959667 816.224