Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2463g00027 ATGGCTTCACTCCGTCGAAGAAGGACCCTAGCACCCAAATCTTCGAGTCTCGACGAAGATGACGTCAGCTGCGAGGAATGCGGATCCGGCTTCTCGCCGGCGAAGTTGCTTCTGTGCGACAAATGCGACCGCGGCTACCACCTCTTCTGTCTCAAACCCATCCTTTCTTCTGTCCCCAAAGGCCCCTGGTTCTGCCCCCCCTGTTCCAACAACAATAACAACCCTAAATCTTTTCCTCTTGTTCAGACCAAAATTATTGATTTCTTTCGAATTCAACGATCTTCCGTTAAACCCCAGATATCAAATCCAGGCACGCGGAAGAAGAGAAAGCGGGGTAGTAGCTTAGTGGTGTTGAAAAAGAAAAGGAAATTGTTTCCTTTCACCCCTATTGAAGATCCTAAAAGGAGATTAGAACAGATGGCATCACTTGCAACAGCGCTTACTGCAACTAAAACTGAATTCAGTAATGATCTTACTTACATGCTTGGAATGGCACCAAGGTCTGCTAATCGTCCTGCTCTTGAACATGGTGGAATGCAGGTCTTATCGAAAGAAGACACCGAGACTTTAAACTTGTGCAAAAGTATGATGGAAAGAGGAGAATGTCCACCTCTCATGGTTGTTTTTGATCCTCTAGAAGGGTTCACTGTAGAAGCGGATAGATTCATTAGAGATTTGACTATAATAACAGAATATGTTGGAGATGTAGACTTCTTAAAGAATCGGGAAAATGATGATGGGGATAGCATAATGACACTTCTTTCAGCTTCTGATCCTTTAAGAACGCTTGTCATCTGTCCAGATAAACGTAGCAACATAGCACGTTTCATTAATGGCATCAATAATCACACACCGGAAGGGAAAAAGAAGCAGAACTTGAAATGCGTGAGATTTGACGTTGATGGTGAATGTCGGGTTCTTTTAATTGCTAATAGAGATATAACAAAGGGGGAAAGGTTGTATTATGACTACAATGGATACGAACATGAATATCCAACTGAACATTTTGTATAA 1014 0.425 MASLRRRRTLAPKSSSLDEDDVSCEECGSGFSPAKLLLCDKCDRGYHLFCLKPILSSVPKGPWFCPPCSNNNNNPKSFPLVQTKIIDFFRIQRSSVKPQISNPGTRKKRKRGSSLVVLKKKRKLFPFTPIEDPKRRLEQMASLATALTATKTEFSNDLTYMLGMAPRSANRPALEHGGMQVLSKEDTETLNLCKSMMERGECPPLMVVFDPLEGFTVEADRFIRDLTIITEYVGDVDFLKNRENDDGDSIMTLLSASDPLRTLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVDGECRVLLIANRDITKGERLYYDYNGYEHEYPTEHFV 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2463g00027 337 ProSitePatterns Zinc finger PHD-type signature. 24 68 IPR019786 -
Gabi2463g00027 337 ProSiteProfiles Zinc finger PHD-type profile. 21 71 IPR019787 -
Gabi2463g00027 337 MobiDBLite consensus disorder prediction 1 22 - -
Gabi2463g00027 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 79 IPR013083 -
Gabi2463g00027 337 CDD PHD_RSF1 24 68 - -
Gabi2463g00027 337 Gene3D SET domain 109 337 IPR046341 -
Gabi2463g00027 337 SUPERFAMILY FYVE/PHD zinc finger 15 77 IPR011011 -
Gabi2463g00027 337 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 88 335 - -
Gabi2463g00027 337 ProSiteProfiles SET domain profile. 203 325 IPR001214 GO:0005515
Gabi2463g00027 337 CDD SET_ATXR5_6-like 200 337 - -
Gabi2463g00027 337 Pfam PHD-finger 24 70 IPR019787 -
Gabi2463g00027 337 SMART PHD_3 23 69 IPR001965 -
Gabi2463g00027 337 FunFam Histone-lysine N-methyltransferase ATXR5 108 337 - -
Gabi2463g00027 337 SUPERFAMILY SET domain 196 325 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2463g00027 Gabi-Chr2463 316445 319390 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2463g00027 21 86 C2H2 Transcription Factor Family AT3G01460 34.328 1.38e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi2463g00027 PHD 4.3e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2463g00027 K24406 - gmx:100791762 556.984