Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2460g00018 ATGAAAGCTGAGTTAAAGGGCACAACTACAACCTTTTCCTTTCAAAACCCTACTACTCTCTTTAACACACCCCACAGTCCTCTTTCAGGGGCACTTAAAGGGTGTCTTGGAAGCCTTGATGGAGCTTGTATTGAGAAGCTCTTACTCCACTGTGCCAGTGCTTTGGAGAGCAACGATGTCACCTTGGCTCAACAAGTTATGTGGGTGCTCAATAACGTTGCTTCTCCTGTTGGTGACACTAACCAAAGGCTCACCTCGTGGTTCCTAAGGGCATTAATCTCTAGGGCTTCAAGAATATGCCCTGCGGCCATGAATTTCAAGGGAAGCAACACCATTCAAAGGAGATTGATGACTCTGACAGAGCTAGCTGGGTATGTGGATCTGATCCCTTGGCATAGGTTTGGATTTTGTGCATCCAATAATGAAATTTTCAAAACAATTATGGGGTTCCAAAGGGTACATATTCTAGATTTTAGCATAACCCATTGTATGCAGTGGCCTACGTTTATAGATGCGTTAGCTAAAAGGCCTGAAGGACCTTCTTCACTTAGAATCACTGTGCCATCTTGTGGGCCACAGGTACCTCCCTTGGTTAATATATCAATACATGAAGTTGGTCTACGTTTAGGGAATTTCGCTAAGTTCAGGGGTGTCCCTTTTGAATTCAATGTTATTGGAAATACAACTCCATTATCATCTGCAGAATTGAGCAATGAATCAAGTAGCTTTAATTTTGAATCACTTTTAAGTCTCTTGAATCCTACTGTGCTAAACCTTAGGGAAGATGAAGCTTTGGTCATAAATTGCCAAAATTGGCTAAGATATTTGTCTGATGATCGAAAGGGAAGTCGCCAAAATCTTTCCCTTCGGGATGCTTTTCTTAATCTAATAAAAGGTCTTAACCCCCGGATTGTGCTTTTGGTTGATGAAGACTGTGATCTTAGTGCATCAAGTCTCACATCAAGAATCACCACCTGTTTCAATCATCTTTGGATACCCTTTGATGCATTGGAGACCTTTTTGCCTAAGGATAGTTGTCAGAGAACAGAATTTGAATCCGACATAGGCCAGAAAATCGAAAACATCATAAGCTTTGAAGGTCATCAAAGAATAGAGAGATTGGAGTCTGGGATGCAAATGTCCCAAAGAATGAAAAATGCTGGTTACTTGAGTCTTCCATTTTGTGATGAAACTGTTAGGGAAGTTAAAGCTTTGCTAGATGAGCATGCTAGTGGATGGGGGATGAAAAGGGAAGAGGGTATGTTGGTTCTTACATGGAAAGGTAACAGCTGTGTGTTTGCGACAGCTTGGGTCCCCAGTGAAATAAGGGATAATATCGGTATGGACTCAAATATGTCATAA 1362 0.4148 MKAELKGTTTTFSFQNPTTLFNTPHSPLSGALKGCLGSLDGACIEKLLLHCASALESNDVTLAQQVMWVLNNVASPVGDTNQRLTSWFLRALISRASRICPAAMNFKGSNTIQRRLMTLTELAGYVDLIPWHRFGFCASNNEIFKTIMGFQRVHILDFSITHCMQWPTFIDALAKRPEGPSSLRITVPSCGPQVPPLVNISIHEVGLRLGNFAKFRGVPFEFNVIGNTTPLSSAELSNESSSFNFESLLSLLNPTVLNLREDEALVINCQNWLRYLSDDRKGSRQNLSLRDAFLNLIKGLNPRIVLLVDEDCDLSASSLTSRITTCFNHLWIPFDALETFLPKDSCQRTEFESDIGQKIENIISFEGHQRIERLESGMQMSQRMKNAGYLSLPFCDETVREVKALLDEHASGWGMKREEGMLVLTWKGNSCVFATAWVPSEIRDNIGMDSNMS 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2460g00018 453 ProSiteProfiles GRAS family profile. 35 438 IPR005202 -
Gabi2460g00018 453 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 45 427 IPR005202 -
Gabi2460g00018 453 Pfam GRAS domain family 45 437 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2460g00018 Gabi-Chr2460 232925 234324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2460g00018 18 439 GRAS Transcription Factor Family AT3G49950 44.084 1.32e-117 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gabi2460g00018 GRAS 2.2e-85 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2460g00018 - - gmx:100805056 801.201