Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2460g00016 ATGGACCCAAATTTCCACTCCATGTTTTCCGGCGACGCCTCCTCCTTCGACCCCATGTTTTCCGGCGTCAGCCTTCAGTCCCTTCTCACTCTCAACCCTTCTCTCTTCACCAACGGTTTCCCAAACTTGGCTTCTCTAACCGACGTCGACCCTCCACAACTGAACCTACCCGAACCCACAGAAACTCCCAATCTCAAAGAGAAGAAGCTCCTTGTCCCCAAAAACGAAAACCACCACAACCACCCTTACCCTTCTCATCTTCCCATAGAAGAGTTTCTCGCTCAACAACCCTTCAACTTCTTCCCCAAATACCAACCCTACGACCACTCCTCCGCGTTCCACCGTCTCCCCCAACTCCGTTCGCCGGAGACCTCATACCCAGCCGAAAGAAAACGCCTCCGCCTTGATCCCACGGCGGATTCTGCGGCGGCGGCGGCGGTGCGTGGAAAGGCACCGTCGGTGATCCCTCAGAGCAACCTGGCACGGCAGAGAAGGCAGAAACTGAGCGAGAAAACGCGTTGCTTGCAGAAACTGATGCCATGGGACACGAAAATGGACCAAGCAACCCTTATGGAAGAGGCTTGCAAGTACGTGAAGTTCTTGCAGGCACAGTTCTGCGTCCTTCAGTCCATGCCGTCACAGACCTCGCCTTTCCTGGCCGCCGTTCATAACAACGGCGGAGGAGGCGGAGGCGGTGGTGGTGTTTTTGGTGACTTGGAGAGGCTGAACAGGAACCAGGTTTTGCAGGTTCTGGTTAACTCACCAGTTGCACAAACCATGCTTTATTCTCAAGGGTTGTGCGTTTTCTCAATGGAACAGTTAGCATTGCTCACACAATTATATGATAGGAAGCAACAAATGTCTGATAATGCTTCCTCCAAAACTTTCTTCAACTAG 897 0.5273 MDPNFHSMFSGDASSFDPMFSGVSLQSLLTLNPSLFTNGFPNLASLTDVDPPQLNLPEPTETPNLKEKKLLVPKNENHHNHPYPSHLPIEEFLAQQPFNFFPKYQPYDHSSAFHRLPQLRSPETSYPAERKRLRLDPTADSAAAAAVRGKAPSVIPQSNLARQRRQKLSEKTRCLQKLMPWDTKMDQATLMEEACKYVKFLQAQFCVLQSMPSQTSPFLAAVHNNGGGGGGGGGVFGDLERLNRNQVLQVLVNSPVAQTMLYSQGLCVFSMEQLALLTQLYDRKQQMSDNASSKTFFN 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2460g00016 298 Gene3D - 157 218 IPR036638 GO:0046983
Gabi2460g00016 298 SMART finulus 158 207 IPR011598 GO:0046983
Gabi2460g00016 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 215 IPR036638 GO:0046983
Gabi2460g00016 298 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 112 274 IPR045843 GO:0003700|GO:0006355
Gabi2460g00016 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2460g00016 Gabi-Chr2460 162374 163270 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2460g00016 164 274 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 46.847 3.48e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2460g00016 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2460g00016 - - aprc:113855910 319.701