Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2460g00012 ATGCCAAGACCTGGTTATGCGGTTGTTTATGTCATTCTTCTTTGCGCGTTGGCCAAAAGGGGCTCAGAGGGGAAGAGGTGGAAACCCGAGGAGTTTTATAGAGACCATGCTGCTTTATCAATGTCCCTTCATTTAGATGGAAAAAAGGCAGAGCAGGCGTGGAAACATTGCAGGAAAGAATTGATAGAGAGGAACAATAATATTGAAGACTTGAACATGCATCTATTGGAAGGGAGTGATGACAAGAGATCTACTCTTTCAATAGAAAAGGACATACACAAAGCAACAAAATTTCTGCCTCCCCATATGAAACAATACTTTTTGGATTGCATAACAAACAGAAATCCTCCTACTCCTGTTTCAGAAGAGCAGGGACATAGTCTGAGGAAGCATCATGTGTCAATCTTTGGTTTTATAGGTGGTCATAGATATTTGCTTTCCAAGCCATCACCAAGCCCAGTTTCTGTTTCATCAGCCAAATCTCCATCTCCAACTCCGAAGCTCCCATATGAAGATTTGCCACTCTTTGTTCCATCTCCACAACCTCCTCCATCTCCTCTTCATCATGTTTTTGATCCCATACATGATAACAAACAAAAGAAGCCAATCATTTTTGCTTCCATTGCATCAGGAATTATAATCTTAATAGGCTTGTTACTATGCTACCGTGAGGTAAGGAAGAGCAAAAAAGTTGAAAGAGATGACAGGCCTTTACTCATATTAAGCTCAAGTGATCTCTCTGGTGGTATGTCTATGTTTAGTTCACAGAGGTCTATTGGTATGGAAAATTCTGATATGAAAGAATCTGGTACTAGCTATAGAAAGAACCCTTCTATAAGGACTTTGTCCATTAAGACTGAAGACAACAATGCCTCATTGGTTGAGACAACATCATCATCATCAGATGGCAAGGGACAAGTACCAAACTCTCTATTACAACCTCCTCCGGGAAGATCAGCCCCTGAGCCTCCACCTCCGCCGCCTCCTGCTCTTGAGCCTCGCCCTCCGCCGCCTCCTCCTAGAGTATCTCGGCCTCCACCTGCTCCTCCCAAACCAGTGGCAGGTAGAAATCAAGATTCACCTCTAGGACCACTTCATTCCAGTGATGGTGGTGAATCTGATGCTCCAAAACCGAAACTAAAGCCATTTTTCTGGGATAAGGTTGTTGCAAATCCTGATCAAGCAATGGTTTGGCATGAGATCAGCGCAGGGTCATTCCAGTTCAGTGAAGAAAAGATAGAGTCTTTATTTGGCTGCGCCAACCCGAACAGAAATGAACGAAGAAAAGAGTCACCATCTCTAGAACCTTCTATCCAGTGCATTCAGATTATTGACCCTAAGAAAGCACAGAATTTATCAATTCTTTTACGTGCTCTGAATGTAACCACAGAAGAAGTTATTGATGCCCTTAAAGAAGGTAACGAGATTCCTGTTGAGCTCATCCAAACAGTATTGAAGATGGCGCCAACAACGGATGAGGAACTGAAGCTAAGGTTATTCACAGGGGACGTTACTCAAATTAGCCCTGCAGAGGGGTTTCTCAAGGCCTTGGTTGACATTCCATTTGCTTTCAAACGTCTTGAGTCTTTGATGTTCATGTTTACACTTCCAGAAGAAGCCTCAAGCATTAAGGAGTGCTTTTCAACATTAGAGGTTTCTTGCGACAAACTAAGAAAAAGCAGGCTCTTCCTAAAGCTATTAGAAGCAGTTCTGAAGACTGGAAACCGCATGAATGATGGTACCTATCGTGGTGGTGCTCAAGCATTTAGGCTTGACACTCTTTTGAAACTTGCAGATGTAAAAGGAACCGATGGCAAGACCACACTACTTCACTTTGTAGTTCAGGAGATTATACGTTCCGAGGGTGTAAGAGCGGTTAGAACAGCAAAAGCAAGCCAAAGCCATTCTAGTATGAAAACTGAGGATTTCATTGAGGACACCAATGAAGAATCAGAAGAGCACTATCGTAGCCTTGGCCTTCAAGTGGTTTCAGGTCTAAGCAGTGAACTAGAAGATGTGAAAAAGGCTGCAATTATAGATGGTGATGCACTAACAGCTGCAGTGTTTAAACTTAATGTGTTATTGAAAAAAGCTGAAGACTTGCTGAACAATGATTTGAAGAATCTCGAAGAAGATAGCGAGTTCCAACATTCCCTGGCAAGTTTTGTGGAGAAAACAAAAGGAGAAGTGTCATGGTTAATGGAGGAAGAGAAGAGGATAATGGCTCAGGTTAAGAGCGCTGCAGATTATTTCCATGGGAATGCAGGAAAAGATGAAGGGTTGCGTTTGTTTGTGATTGTACGTGATTTCTTGATAATGTTGGATAAGGTTTGCAAAGAGGTGAAGGATACAACAATGAAGACAGGGAAGGCTTTTATTTCCAAGATAGAGGCTCCATCCATGTCATCCTCTCCAGACAAGAGTCATCCGTCACCTTCTGATGTACATAGGCGGCTATTTCCAGCCATAGCAGAGCGGCGAATGCATGACTCTAGTTCTGATGATGATGATGATGAGAACCTACCTACATAG 2532 0.4265 MPRPGYAVVYVILLCALAKRGSEGKRWKPEEFYRDHAALSMSLHLDGKKAEQAWKHCRKELIERNNNIEDLNMHLLEGSDDKRSTLSIEKDIHKATKFLPPHMKQYFLDCITNRNPPTPVSEEQGHSLRKHHVSIFGFIGGHRYLLSKPSPSPVSVSSAKSPSPTPKLPYEDLPLFVPSPQPPPSPLHHVFDPIHDNKQKKPIIFASIASGIIILIGLLLCYREVRKSKKVERDDRPLLILSSSDLSGGMSMFSSQRSIGMENSDMKESGTSYRKNPSIRTLSIKTEDNNASLVETTSSSSDGKGQVPNSLLQPPPGRSAPEPPPPPPPALEPRPPPPPPRVSRPPPAPPKPVAGRNQDSPLGPLHSSDGGESDAPKPKLKPFFWDKVVANPDQAMVWHEISAGSFQFSEEKIESLFGCANPNRNERRKESPSLEPSIQCIQIIDPKKAQNLSILLRALNVTTEEVIDALKEGNEIPVELIQTVLKMAPTTDEELKLRLFTGDVTQISPAEGFLKALVDIPFAFKRLESLMFMFTLPEEASSIKECFSTLEVSCDKLRKSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFRLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGVRAVRTAKASQSHSSMKTEDFIEDTNEESEEHYRSLGLQVVSGLSSELEDVKKAAIIDGDALTAAVFKLNVLLKKAEDLLNNDLKNLEEDSEFQHSLASFVEKTKGEVSWLMEEEKRIMAQVKSAADYFHGNAGKDEGLRLFVIVRDFLIMLDKVCKEVKDTTMKTGKAFISKIEAPSMSSSPDKSHPSPSDVHRRLFPAIAERRMHDSSSDDDDDENLPT 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2460g00012 843 MobiDBLite consensus disorder prediction 810 834 - -
Gabi2460g00012 843 Coils Coil 692 712 - -
Gabi2460g00012 843 MobiDBLite consensus disorder prediction 258 379 - -
Gabi2460g00012 843 MobiDBLite consensus disorder prediction 797 843 - -
Gabi2460g00012 843 SUPERFAMILY Formin homology 2 domain (FH2 domain) 324 785 - -
Gabi2460g00012 843 PANTHER FORMIN-RELATED 134 834 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Gabi2460g00012 843 MobiDBLite consensus disorder prediction 314 354 - -
Gabi2460g00012 843 Gene3D Formin, FH2 domain 376 797 IPR042201 -
Gabi2460g00012 843 ProSiteProfiles Formin homology-2 (FH2) domain profile. 370 800 IPR015425 -
Gabi2460g00012 843 SMART it6_source 370 789 IPR015425 -
Gabi2460g00012 843 MobiDBLite consensus disorder prediction 258 308 - -
Gabi2460g00012 843 Pfam Formin Homology 2 Domain 372 774 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2460g00012 Gabi-Chr2460 140744 145125 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2460g00012 363 798 FH2 protein (formin) Gene Family AT5G67470 46.325 3.74e-117 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2460g00012 - - qsa:O6P43_000616 798.89