Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2460g00009 ATGGACATCGATTCCTCAGGAGCCTCCACTTGGCTCTATGATTATGACTTTGATATCTCAGTTGATGGAGTTGACTTCATGGCTGCAGACTCTGGTGGTTTCAGCTGGGTGCCTCAGAGTCACACCTTCAAGGGTCCTTCAAATATGAGTTTGGAAATGGATTACTCACTGGATTCAACTGTCCTGGAAAATGGCCCTTCAAAACGGTTAAGGTCTGAATCATGTGCATCTGGCTCCAAGGCATGTCGTGAGAAATTGCGAAGGGATAAACTAAATGAGAGGTTTCTGGAATTGAGTTCTATCTTGGAGCCTGGTAGGCTGCCCAAAACAGACAAGGTTGCTATATTAAGTGATGCGGTTCGAGAGGTAACCCAATTAAGAAATGAAGCCCAGAAGCTGAAGGAAATGAATGACGAATTACTTGCAAAAATTAAAGAATTGAAGGCTGAGAAGAATGAGATTCGTGATGAGAAGAATAGACTCAAGGAAGACAAAGAAAAGTTGGAGGAACAGGTCAAGTTGTCAAATGTACAACCCAGCTTCATGCCTCATGCCCCGGATGCTAAAGGGCAAGCTGCTAGCCACAAGCTGGTACCTTTCATTGGTTACCCTGGATTTGCCATGTGGCAGTTTATGCCCCCTGCTGTAGTTGATACATCAAAGGATCATCTGCTTCGACCTCCAGTTGCATAA 693 0.4459 MDIDSSGASTWLYDYDFDISVDGVDFMAADSGGFSWVPQSHTFKGPSNMSLEMDYSLDSTVLENGPSKRLRSESCASGSKACREKLRRDKLNERFLELSSILEPGRLPKTDKVAILSDAVREVTQLRNEAQKLKEMNDELLAKIKELKAEKNEIRDEKNRLKEDKEKLEEQVKLSNVQPSFMPHAPDAKGQAASHKLVPFIGYPGFAMWQFMPPAVVDTSKDHLLRPPVA 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2460g00009 230 Gene3D - 79 155 IPR036638 GO:0046983
Gabi2460g00009 230 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Gabi2460g00009 230 CDD bHLH_AtILR3_like 80 155 - -
Gabi2460g00009 230 Coils Coil 116 178 - -
Gabi2460g00009 230 SMART finulus 81 132 IPR011598 GO:0046983
Gabi2460g00009 230 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Gabi2460g00009 230 PANTHER BHLH TRANSCRIPTION FACTOR 7 230 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Gabi2460g00009 230 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 150 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2460g00009 Gabi-Chr2460 120757 123116 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2460g00009 24 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 57.778 9.48e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2460g00009 HLH 3.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2460g00009 - - gmx:100806838 390.578