Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2459g00017 ATGTTCCCTTCCTCTTACAATTCTGGCCCTTATCCTTACTTCCCTTCATCTTCTTCTTCTTCTTCATACCCTCATTTTCCTTTCCTTAACCCTGAAAATGGTTCTACAAGTAACACTTTCCTTCATGATCCACTTTCTGTTCCTTATATACCAACCCATAACAATCATATCCCAGAAACACTGACCAATTTGGCAATTGCAGATAATTGTGGTGGTGGCGGTGGCGGTGGTGGTTCTGCAATGCTCAAACAGGATCTTAATGGTTCTCACTATGGAATTTCCTGTTTGCTCACAAAGAAACCAGTGAAGAAAGATAGGCACAGCAAGATTTACACCTCTCAGGGTTTGAGAGACCGAAGGGTGAGGTTGTCCATTGAGATTGCTCGCAAGTTTTTTGATCTTCAAGACATGTTAGGGTTTGACAAAGCAAGCAATACCCTCGAATGGCTCTTCAACAAGTCCAAGAAAGCAATTAAGGAGCTAGCAAGGAGCAAGAACAGCAACAGTGAAGGTGCTAATAAGAGCTTCTCCTCATCTTCTGATTGTGAAGACTGTGAAGTGGTTTCTGGGATCAAGCAACAACATGATCATACTCCAAACCTAGAAGGGTTAGATTCATATGATCACAAGTCATTGATGGGTGGAAGTGATGCTAGTAAAGAGAGGAAGATGAAAAGGGCACAGAAGGAACCTGCTTATTGTGTTAAGGCAAAGATGAAGGAATCAAGGGAAAAAGCAAGAGCAAGAGCAAGGGAAAGGACTAGTAACAAGATGTGCAACACTACTACCACCATTGGAGGAAGGGTGCAAGACTTGAAGAAAAAGTGCCCTGCAACTGAAAACCTTCAAATCATGCACCAATCTCCTCTGGGTAGTGAAGCACCAAGAGATGACTTCAATGTTATTGAGGAATCCATTGTGATCAAGAGAAAGTTGAAACCCTCATTAATGTCTTCTCATCATCACCAAAACCTTATGATCCCTAAGGAAACAAGTTTCAACAACAACACTAATGACTACCACTCCTTCCCTAATTTGTCTCCAAATTGGGATGCTAATGGTGCCACCTCTGGCCGCTCCAACTTTTGTGCCATAGCCACAATGAACCTCTCCACAGGGCTCCAAATCTTTGGAAAGTCTTGGGAGGAGTGCACCAATCCACGTCTACATTAG 1173 0.428 MFPSSYNSGPYPYFPSSSSSSSYPHFPFLNPENGSTSNTFLHDPLSVPYIPTHNNHIPETLTNLAIADNCGGGGGGGGSAMLKQDLNGSHYGISCLLTKKPVKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKKAIKELARSKNSNSEGANKSFSSSSDCEDCEVVSGIKQQHDHTPNLEGLDSYDHKSLMGGSDASKERKMKRAQKEPAYCVKAKMKESREKARARARERTSNKMCNTTTTIGGRVQDLKKKCPATENLQIMHQSPLGSEAPRDDFNVIEESIVIKRKLKPSLMSSHHHQNLMIPKETSFNNNTNDYHSFPNLSPNWDANGATSGRSNFCAIATMNLSTGLQIFGKSWEECTNPRLH 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2459g00017 390 Pfam TCP family transcription factor 102 260 IPR017887 -
Gabi2459g00017 390 MobiDBLite consensus disorder prediction 162 181 - -
Gabi2459g00017 390 ProSiteProfiles TCP domain profile. 103 161 IPR017887 -
Gabi2459g00017 390 MobiDBLite consensus disorder prediction 191 231 - -
Gabi2459g00017 390 MobiDBLite consensus disorder prediction 164 181 - -
Gabi2459g00017 390 ProSiteProfiles R domain profile. 240 257 IPR017888 -
Gabi2459g00017 390 MobiDBLite consensus disorder prediction 214 231 - -
Gabi2459g00017 390 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 99 349 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2459g00017 Gabi-Chr2459 300206 301566 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2459g00017 99 353 TCP Transcription Factor Family AT1G67260 36.803 1.34e-30 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gabi2459g00017 TCP 1.3e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2459g00017 - - gmx:100801549 470.314