Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2455g00014 ATGCTGATCCAAAATTTTGCAGAATACCAGTGGCTTGAAGTATACCAGTTGATAACTCTGTTTTTAGTGTTGAGTGTTGAAGGTGAAATTGCTACGAAGATGGATAAAGAAGATGATGTAAACCATGGTGATAATGTGCAAGATATAGAAAACGAAGCTCCATTGGATGGGAATCAGGAAATTGGAAGGTACTGGTCAGAGTTTTCTGAGAGAAACATGACATATTCACAGCCACTTCTTGTGAAGAGGACTAACACCACCTCCCAGATTGCTATAGTTGGTGCCAACCTCAGCCCTATTGAAAGCCTTGACTATGAGATTTTTGAAAATGAAATATTTAAGCAGGATTGGAGGTCCCGGAAGAAGGTTCAGATATTCCAGTATGTGATACTCAAGTGGGCATTTGCTCTTCTCATTGGATTAGGTACTGGACTGGTTGGCGTCTTTAATACACTAGCAGTTGAGAACATAGCTGGTTTCAAGCTGCTTCTGACAACCAGTCTCATGTCTAAGCAAAGATATCTTGAGGCTTTTTTAGCATATGCTGGTCTCAACATGTTTTTAGCAGCAGCAGCTGGAGCACTCTGTGCTTTCATTGCTCCAGCAGCAGCAGGTTCTGGCATTCCAGAGGTTAAAGCATATCTCAACGGCATTGATGGTCACTCTATACTCGCTCCAAGCACCCTTTTTGTGAAGATTTTTGGTTCCATCTTTGGAGTTTCTGCTGGATTTGTGGTGGGCAAAGAAGGACCTATGGTGCATACAGGTGCATGCATAGCTTCTTTACTGGGGCAGGGTGGATCTCGCAAGTATGGCTTGACTTGCAAATGGCTTAAGTATTTCAAAAATGACCGAGACCGGCGAGACATGATTACTTGTGGTGCTGCTGCTGGAGTTGCCGCTGCTTTTCGTGCTCCAGTTGGTGGTGTTCTCTTTGCCCTTGAAGAGGCCGCTTCATGGTGGCGGAGTGCTCTTCTCTGGAGGACATTTTTCACGACCGCAGTGGTTGCTATTGTTTTAAGAGCTGCAATTCAGCTTTGTGCCACAGGGAAATGTGGACTATTTGGGGAAGGTGGTCTTATAATGTATGATGTGAGCTCAGCCAAGGTAACATATAGTGTTGCTGATGTATTAGCAGCTCTAATCTTGGGAGCAATTGCTGGCGTTCTTGGAAGCATATATAATCACCTTGTGGATAAGGTTGTTCGTACATATAGCTTCATCAATGAAAAAGGTCCAGCTTTCAAAATGTCTCTTGTTATCGCAATTGCTCTTTTGACCTCATGTTGTTTTTATTTCCTACCATGGGTTGCAAACTGTATCCCTTGCCCTGGTGATCAGACAGTGAAATGTCCCTCTGCTGATGAGTCTGGAGATTATAAAATCTTTCAATGTCCACCAGGCCACTATAATGATCTTGCTTCTCTCTTTCTAAACACCAATGATGATGCTATTCGGAATCTATTCAGCTCCAGGATAACCAAAGAGTTTCATATTTCAAGTTTGTTTATCTACTTTGTTACTATTTACTTTCTTGGGATAATCACTTATGGTATTGCTATTCCATCTGGGCTTTTCATTCCTGTGATACTTGCTGGGGCTGCCTATGGCCGTCTTATCGGGAGGCTCTTCGAACCGATTGCCAAACTTGACACAGGACTCTTTGCCCTCCTTGGAGCTGCCTCGTTCCTTGGTGGCACCATGAGAATGACAGTCTCCCTTTGTGTTATATTGCTTGAGCTCACCAATGATCTCTTGTTACTTCCACTTGTGATGTTGGTCTTATTAGTCTCAAAAACAGTGGGTGATAGCTTCAACAAGGGTGTCTATGATCAAATACTGAAGATCAAAGGACTTCCTTATTTGGAGGCTCATGCAGAACCTTACATGAGGAACCTAGTTGCACGTGATGTTGTCTCTGGTCCATTAGTAACCTTTTCTGGCATTGAAAGGGTGGCGAATATATTACATGCTTTGGATACTACAGGACATAATGGCTTTCCTGTCATTGATGAACCACCTTTCTCAGATGCACCAGAGTTGTGTGGACTAGTACTGAGGTCTCATTTGCTAGTGTTGCTCAAGGGGAAGAACTTTTCAAGAGATAGGGTCTTCGCGGCTCAGAGCATCTACCAAAGATTATCTGCATTAGATTTTGCAAAGGCAGGATTAGGGAAGGGAATCAAACTAGAGGATCTAGATATCGAAGAGGAAGAGATGGATATGTATGTTGATCTCCATCCCATAACTAATGCATCCCCATACACTGTGGTTGAGACAATGTCACTTGCCAAAGCTGCTATTCTTTTCCGCCAACTTGGACTCAGGCACATGTGTGTTGTTCCAAAGAGCCAAGAGAGACCTCCAATTGTTGGGATTCTGACACGCCATGATTTTATGCCTGAGCATGTTTTGGGACTATACCCTGATATCAAGCCTCACAAAGGACACTGA 2454 0.4332 MLIQNFAEYQWLEVYQLITLFLVLSVEGEIATKMDKEDDVNHGDNVQDIENEAPLDGNQEIGRYWSEFSERNMTYSQPLLVKRTNTTSQIAIVGANLSPIESLDYEIFENEIFKQDWRSRKKVQIFQYVILKWAFALLIGLGTGLVGVFNTLAVENIAGFKLLLTTSLMSKQRYLEAFLAYAGLNMFLAAAAGALCAFIAPAAAGSGIPEVKAYLNGIDGHSILAPSTLFVKIFGSIFGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYGLTCKWLKYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVLRAAIQLCATGKCGLFGEGGLIMYDVSSAKVTYSVADVLAALILGAIAGVLGSIYNHLVDKVVRTYSFINEKGPAFKMSLVIAIALLTSCCFYFLPWVANCIPCPGDQTVKCPSADESGDYKIFQCPPGHYNDLASLFLNTNDDAIRNLFSSRITKEFHISSLFIYFVTIYFLGIITYGIAIPSGLFIPVILAGAAYGRLIGRLFEPIAKLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNDLLLLPLVMLVLLVSKTVGDSFNKGVYDQILKIKGLPYLEAHAEPYMRNLVARDVVSGPLVTFSGIERVANILHALDTTGHNGFPVIDEPPFSDAPELCGLVLRSHLLVLLKGKNFSRDRVFAAQSIYQRLSALDFAKAGLGKGIKLEDLDIEEEEMDMYVDLHPITNASPYTVVETMSLAKAAILFRQLGLRHMCVVPKSQERPPIVGILTRHDFMPEHVLGLYPDIKPHKGH 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2455g00014 817 PRINTS Chloride channel signature 571 590 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi2455g00014 817 PRINTS Chloride channel signature 201 218 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi2455g00014 817 PRINTS Chloride channel signature 609 623 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi2455g00014 817 PRINTS Chloride channel signature 296 315 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi2455g00014 817 PRINTS Chloride channel signature 553 569 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi2455g00014 817 PRINTS Chloride channel signature 521 541 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi2455g00014 817 PRINTS Chloride channel signature 232 251 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi2455g00014 817 CDD ClC_6_like 101 622 - -
Gabi2455g00014 817 SUPERFAMILY Clc chloride channel 110 625 IPR014743 -
Gabi2455g00014 817 Pfam Voltage gated chloride channel 189 602 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi2455g00014 817 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 58 805 - -
Gabi2455g00014 817 ProSiteProfiles CBS domain profile. 749 811 IPR000644 -
Gabi2455g00014 817 FunFam Chloride channel ClC3 124 448 - -
Gabi2455g00014 817 Gene3D Clc chloride channel 124 622 - -
Gabi2455g00014 817 SUPERFAMILY CBS-domain pair 626 800 IPR046342 -
Gabi2455g00014 817 CDD CBS_pair_voltage-gated_CLC_euk_bac 635 802 - -
Gabi2455g00014 817 PRINTS Plant CLC chloride channel signature 106 114 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi2455g00014 817 PRINTS Plant CLC chloride channel signature 349 356 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi2455g00014 817 PRINTS Plant CLC chloride channel signature 317 325 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi2455g00014 817 PRINTS Plant CLC chloride channel signature 473 489 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi2455g00014 817 PRINTS Plant CLC chloride channel signature 331 341 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi2455g00014 817 Pfam CBS domain 753 799 IPR000644 -
Gabi2455g00014 817 Gene3D - 623 805 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2455g00014 Gabi-Chr2455 229576 242576 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2455g00014 38 815 Ion Channels AT5G49890 72.727 0.0 1120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2455g00014 K05016 - gmx:100809070 1226.85