Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2455g00013 ATGGATAAAGAAGATGATGTAAACCATGGTGATAATGTGCAAGATATAGAAAACGAAGCTCCATTGGATGGGAATCAGGAAATTGGAAGGTACTGGTCAGAGTTTTCTGAGAGAAACATGACATATTCACAGCCACTTCTTGTGAAGAGGACTAACACCACCTCCCAGATTGCTATAGTTGGTGCCAACCTCAGCCCTATTGAAAGCCTTGACTATGAGATTTTTGAAAATGAAATATTTAAGCAGGATTGGAGGTCCCGGAAGAAGGTTCAGATATTCCAGTATGTGATACTCAAGTGGGCATTTGCTCTTCTCATTGGATTAGGTACTGGACTGGTTGGCGTCTTTAATACACTAGCAGTTGAGAACATAGCTGGTTTCAAGCTGCTTCTGACAACCAGTCTCATGTCTAAGCAAAGATATCTTGAGGCTTTTTTAGCATATGCTGGTCTCAACATGTTTTTAGCAGCAGCAGCTGGAGCACTCTGTGCTTTCATTGCTCCAGCAGCAGCAGGTTCTGGCATTCCAGAGGTTAAAGCATATCTCAACGGCATTGATGGTCACTCTATACTCGCTCCAAGCACCCTTTTTGTGAAGATTTTTGGTTCCATCTTTGGAGTTTCTGCTGGATTTGTGGTGGGCAAAGAAGGACCTATGGTGCATACAGGTGCATGCATAGCTTCTTTACTGGGGCAGGGTGGATCTCGCAAGTATGGCTTGACTTGCAAATGGCTTAAGTATTTCAAAAATGACCGAGACCGGCGAGACATGATTACTTGTGGTGCTGCTGCTGGAGTTGCCGCTGCTTTTCGTGCTCCAGTTGGTGGTGTTCTCTTTGCCCTTGAAGAGGCCGCTTCATGGTGGCGGAGTGCTCTTCTCTGGAGGACATTTTTCACGACCGCAGTGGTTGCTATTGTTTTAAGAGCTGCAATTCAGCTTTGTGCCACAGGGAAATGTGGACTATTTGGGGAAGGTGGTCTTATAATGTATGATGTGAGCTCAGCCAAGGTAACATATAGTGTTGCTGATGTATTAGCAGCTCTAATCTTGGGAGCAATTGCTGGCGTTCTTGGAAGCATATATAATCACCTTGTGGATAAGGTTGTTCGTACATATAGCTTCATCAATGAAAAAGGTCCAGCTTTCAAAATGTCTCTTGTTATCGCAATTGCTCTTTTGACCTCATGTTGTTTTTATTTCCTACCATGGGTTGCAAACTGTATCCCTTGCCCTGGTGATCAGACAGTGAAATGTCCCTCTGCTGATGAGTCTGGAGATTATAAAATCTTTCAATGTCCACCAGGCCACTATAATGATCTTGCTTCTCTCTTTCTAAACACCAATGATGATGCTATTCGGAATCTATTCAGCTCCAGGATAACCAAAGAGTTTCATATTTCAAGTTTGTTTATCTACTTTGTTACTATTTACTTTCTTGGGATAATCACTTATGGTATTGCTATTCCATCTGGGCTTTTCATTCCTGTGATACTTGCTGGGGCTGCCTATGGCCGTCTTATCGGGAGGCTCTTCGAACCGATTGCCAAACTTGACACAGGACTCTTTGCCCTCCTTGGAGCTGCCTCGTTCCTTGGTGGCACCATGAGAATGACAGTCTCCCTTTGTGTTATATTGCTTGAGCTCACCAATGATCTCTTGTTACTTCCACTTGTGATGTTGGTCTTATTAGTCTCAAAAACAGTGGGTGATAGCTTCAACAAGGGTGTCTATGATCAAATACTGAAGATCAAAGGACTTCCTTATTTGGAGGCTCATGCAGAACCTTACATGAGGAACCTAGTTGCACGTGATGTTGTCTCTGGTCCATTAGTAACCTTTTCTGGCATTGAAAGGGTGGCGAATATATTACATGCTTTGGATACTACAGGACATAATGGCTTTCCTGTCATTGATGAACCACCTTTCTCAGATGCACCAGAGTTGTGTGGACTAGTACTGAGGTCTCATTTGCTAGTGTTGCTCAAGGGGAAGAACTTTTCAAGAGATAGGGTCTTCGCGGCTCAGAGCATCTACCAAAGATTATCTGCATTAGATTTTGCAAAGGCAGGATTAGGGAAGGGAATCAAACTAGAGGATCTAGATATCGAAGAGGAAGAGATGGATATGTATGTTGATCTCCATCCCATAACTAATGCATCCCCATACACTGTGGTTGAGACAATGTCACTTGCCAAAGCTGCTATTCTTTTCCGCCAACTTGGACTCAGGCACATGTGTGTTGTTCCAAAGAGCCAAGAGAGACCTCCAATTGTTGGGATTCTGACACGCCATGATTTTATGCCTGAGCATGTTTTGGGACTATACCCTGATATCAAGCCTCACAAAGGACACTGA 2355 0.4357 MDKEDDVNHGDNVQDIENEAPLDGNQEIGRYWSEFSERNMTYSQPLLVKRTNTTSQIAIVGANLSPIESLDYEIFENEIFKQDWRSRKKVQIFQYVILKWAFALLIGLGTGLVGVFNTLAVENIAGFKLLLTTSLMSKQRYLEAFLAYAGLNMFLAAAAGALCAFIAPAAAGSGIPEVKAYLNGIDGHSILAPSTLFVKIFGSIFGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYGLTCKWLKYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVLRAAIQLCATGKCGLFGEGGLIMYDVSSAKVTYSVADVLAALILGAIAGVLGSIYNHLVDKVVRTYSFINEKGPAFKMSLVIAIALLTSCCFYFLPWVANCIPCPGDQTVKCPSADESGDYKIFQCPPGHYNDLASLFLNTNDDAIRNLFSSRITKEFHISSLFIYFVTIYFLGIITYGIAIPSGLFIPVILAGAAYGRLIGRLFEPIAKLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNDLLLLPLVMLVLLVSKTVGDSFNKGVYDQILKIKGLPYLEAHAEPYMRNLVARDVVSGPLVTFSGIERVANILHALDTTGHNGFPVIDEPPFSDAPELCGLVLRSHLLVLLKGKNFSRDRVFAAQSIYQRLSALDFAKAGLGKGIKLEDLDIEEEEMDMYVDLHPITNASPYTVVETMSLAKAAILFRQLGLRHMCVVPKSQERPPIVGILTRHDFMPEHVLGLYPDIKPHKGH 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2455g00013 784 CDD ClC_6_like 68 589 - -
Gabi2455g00013 784 CDD CBS_pair_voltage-gated_CLC_euk_bac 602 769 - -
Gabi2455g00013 784 ProSiteProfiles CBS domain profile. 716 778 IPR000644 -
Gabi2455g00013 784 Pfam Voltage gated chloride channel 156 569 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi2455g00013 784 SUPERFAMILY Clc chloride channel 77 592 IPR014743 -
Gabi2455g00013 784 PRINTS Chloride channel signature 263 282 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi2455g00013 784 PRINTS Chloride channel signature 520 536 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi2455g00013 784 PRINTS Chloride channel signature 199 218 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi2455g00013 784 PRINTS Chloride channel signature 538 557 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi2455g00013 784 PRINTS Chloride channel signature 168 185 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi2455g00013 784 PRINTS Chloride channel signature 576 590 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi2455g00013 784 PRINTS Chloride channel signature 488 508 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi2455g00013 784 FunFam Chloride channel ClC3 91 415 - -
Gabi2455g00013 784 SUPERFAMILY CBS-domain pair 593 767 IPR046342 -
Gabi2455g00013 784 Gene3D Clc chloride channel 91 589 - -
Gabi2455g00013 784 Pfam CBS domain 720 766 IPR000644 -
Gabi2455g00013 784 Gene3D - 590 772 IPR046342 -
Gabi2455g00013 784 PRINTS Plant CLC chloride channel signature 284 292 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi2455g00013 784 PRINTS Plant CLC chloride channel signature 440 456 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi2455g00013 784 PRINTS Plant CLC chloride channel signature 73 81 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi2455g00013 784 PRINTS Plant CLC chloride channel signature 298 308 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi2455g00013 784 PRINTS Plant CLC chloride channel signature 316 323 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi2455g00013 784 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 25 772 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2455g00013 Gabi-Chr2455 229576 242740 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2455g00013 5 782 Ion Channels AT5G49890 72.727 0.0 1119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2455g00013 K05016 - gmx:100809070 1221.07