Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2455g00009 ATGATAAAAAGGATGGATGTTGATGAAGGTCATGTTGATTCTTTCTGGAAGGAGGAAATTAGTGAGAAGGTTCAGAGTCCTATGACAAAGAAAAGGAAATATAGGAAAAAGAAAAAGGAGTATGATGGATGGGGATCAACTTCCCTTATTCGGTTTCTTGAATCCATTGGCAGAGACACAAGCAACCAGATGACTCAAAGTGAGGTGGCTAAGATTGTCAATGAGTATGTTAAGCAGAATGGCCTTCATCATCCTACAGAAAAGAAAAGAATTGTGTGTGATGAGAGGCTTCATTTGCTGTTCAGAAGGAAGGCCATTAGCCGATTGAAAATTAATTACCTGCTTGAATCACACTTTGCTGAGAACTGTGAAGAATCTTCTGATGATATTTTTTCTAACTCGGAAGATGATGTGTATGAAACCCCGAAAACGACAGGTTCAGAGAGGAAGAGTCATCCGAAGATACCGTTTATGGAAAAACCAAGGAGCTGTTTTGCTGCCATCATTCCTAACAACATCAAACTTGTTTATTTGAAGAAGAGTCTAGTTGAGGAGCTTCTACTGGACCCTGAAACTTTTGAGACTAAAGTAGTTGGAAGCTTCATAAGAATCAGACGTGACCCAAATGACTACCTTCAGAAAAATCCATTCCAGCTTCTGCAAGTCACAGGTATAAAGAAGAGCTCTGGAGTGGATGGGGAAATTCTCCTACAAAGCTCTGGTTTCATCAAAGACATCAGCATTCACATGCTTTCAGATGTTAACTTCTCTGAGGAGGAGTGTGAGGATTTGCAGCGAAGAGTAAAAGACGGCTTGCTCAAGAGACCTATGGTTGTAGATATAGAGCAGACAGCAAGAGTATTACATGAGGATATGACTAAGCATGGGCTGCCAAGAGAACTCGATCGGTTACAAAATCTTATTGATCGAGCTAATGAAAAGGGTTTGCATAGAGAACTGGATGAATACCTACAAAAAAGGGAGAAACTTCAGAGTCCAGAAGAACAGGAACGTTTATTGCATGAAATTCCTCAAGTTATTGCAGATGATCTAGAATCTGAACGTAAAACACCAATTGTTCCAGAGATAAAAATAAAAAAGGATTTGATTACCAGTACAAAAGCATCTTCAGTGTCTAAGGTCCCAAAAGCAGTTGCAGATGGTTTTGTATCCAAGGCTACAAAACTGGATATGGCTGATCATGTAAAACAAGAAAACAAATCCCCTAAGTCAATTGTCAGTCTGGATAGAGCATCAGAAGTTCCTCTTTTCAATATGGCAGTGGACGGCACTTTGTCGAATTGCATATCTGGTGACACTGCTGCAGGCTTTATACAACCCCCATTGTGGCAAAGCAAAAAGACGGAGTGGCCTGTTTGCACGGATGAACACGTAAAGCTCCGAACACAAATGGAATCACCCAGAGAAATGGACACTTCAAAAAGCAAAATGAGTAATTTTATTTATTCAGAATCGTCTTCTTTTAGTGAGATGGACACTTCAAAGAGTGACTATGATAACGAACAAACAAAGATGCCAGTAATTGTGAATAAGGAACAAGATGGATATGAGCCAAAAATTGGAATGATATTTTCAAATGAAGATGAAGCTTATGATTTTTATAATGATTATGCTAAATTTGTTGGCTTTACTGTGAGAAAATCAAAATATCGTAGATTCGCAGATGGAAGCATAAGCCAAAGGACATTTGTTTGTGGAAGAGAAGGGTATAGAAAGTTGAAGGACCCTTCACATGTGAACAAGAAAAATAGGAGAGAAACAAGAACGGGTTGTCAAGCTATGATATGTTTCAAAATTGAGAAGGATGCTTGGGTTGTTTATAAATTCATTCCAAATCATAATCATGATCTTGTGAAATCATGTGCAAGAGCTATGTTAAGATCACAAAGGCATGTAAATGAAGCATATGCTAATATGATTGAAGATATGGACAATCCTGGTGTAAAACCATGTAAGGTGTTTTCATATTTTGTTGAAGCTGCTAGAAGAGTGGAAAATGTTGGATTTTTGAAATCTGATTGCCTACAAAGTGAAAGAAGCAAAAATCGTAACGCAGGAGATGCACAAAGTGTTATAAATCATTTCAGAAGTTCACAAGCAAATGATCCGGCATTCGTCTATACAATGCAAGTAGATCATGAAAACCGCATGACTAATTTTTTTTGGAGAGATGGGATATCAAGGATAGATTATAATCACTTTGGAGATGTAGTTATTTTTGACACAACCTACCGAACAAACAAATATAATATGGCTTGCGCACCTTTCATTGGGGTAAATCATCATAAGCAAAGTGTTTTGTTTGGTTGTGCTTTCTTGTTTGATGAGACAACAGAGTCATTCATTTGGCTATTTGAATCTTTTTTGGAAGCAATGGGAGGGCTGCAACCTAAAACAATTTTTACTGATCAATGTCAAGCAATGGCCAATGCTATTAAAAGAGTTCTTCCTGAATCTCAACATCGACTTTGCTTGTGGCATATTGGTCAAAATGCAGCCAACCATCTTTCTTATTATTTGGGAAATTCTGACTTCAAGGTGTTATTTAATAGGTGTCTCTACAATTGTGGATCAGAGAAAGAATTTGAAGACGTGTGGACCCGTTTACTTACAAAAGTTGATATTTCAAAATGCTCATGGTTGAAGAAAATTTATGACTTACGAGCAAATTGGTGCCCAGCATTTAGTAAAAATTATTTTTCAGCTGGCATCTTATCAACACAAAGAAGTGAGAGTATGAATAATGTTTTCCGCACTGTCACTTGCAAGACAATGTCTCTTACTCAACTTGTACTTCGTTATGAAATTTTTTTGGAGCGTAGACGTTGTTCAGAATTGCAAAAGGACTTTGAATGCAATCAATCTACGCCTCCTAGAGTAAAACAACTTACAGGTATGGCTGCACAAGTTGCACGGGTATATACTCATGTTATTTTTGAAGAATTCTATGAAGAATTGTTTGAATCTTTATCCGTGGCAATTGAAAAAATCAATGAAAGTGGTACTTTCTTTTGTTACAAGTTGGTTAAATCTGGTGATGACAAACAATATTTTGTGACATTTGAATCTGCGAATTGCTTGGTTGAATGTAGTTGTAAAATGTTTGAATCTGTTGGTCTCCTGTGTCTTCATGCATTGAAAGTACTTAATTTTCACAATATTTTTCATATTCCTTCTCAATATATCTTGAAGAGGTGGACAAAAGATGCTAAAGATAGTTTTAGTATAAGTGACAATGGAAAACAAGCTTGTGAGGTTTCAAGACAAGGAATTAATCTACGTATGAGCCAAATAATGAGAAAGGCCATTTATTTTGCAACGAAGGGTGCATTGACAAATGAGACAACCAAAATGGCTGAAGATCACTTAGAGCAAGGGATAAAAAGCTTGGAGAGGATGTTTAAAAATATTTGTATGATGGATACAACTGAAGTTGATGATAAAATTAGTGATGAAGAGAAAGATGAGCACAATAAATTATTAGATCCACAATGTGTTCAAGCAAGGGGAGTTACAAATGCTAGACTCAAAAGTCAGTTGGAAAAGAAAAGGTGCAAGAGAAATGTATCACAAGCTCATAATAAATCCCAAGGTGCTAGTACATCCAAATCTCCAAGACATAATCATGTTTATAAAGGCAAAGCTTCAAGAGTCAAAGATTTTAGCACCTCTTCTACACCTCCACCAACTTTTTGTTTTCCATCTCTCTCTCAAGTGTCAAGTGCTAATGTAGCTCCACCTGCATTTTGTTTTCCATATATGTGTCAAGTGCCATATACACAGGACCCTAATATAGGAGTAGCGGGTCTTGATTGTTCATATGATTCACAATCGAGCATCCAAGAGATGGTTCATTTAAATTCAAGTGCTCAGAACCTCAATGGCAATTTTGCTACTCAAAAAATTGATTGA 3933 0.3692 MIKRMDVDEGHVDSFWKEEISEKVQSPMTKKRKYRKKKKEYDGWGSTSLIRFLESIGRDTSNQMTQSEVAKIVNEYVKQNGLHHPTEKKRIVCDERLHLLFRRKAISRLKINYLLESHFAENCEESSDDIFSNSEDDVYETPKTTGSERKSHPKIPFMEKPRSCFAAIIPNNIKLVYLKKSLVEELLLDPETFETKVVGSFIRIRRDPNDYLQKNPFQLLQVTGIKKSSGVDGEILLQSSGFIKDISIHMLSDVNFSEEECEDLQRRVKDGLLKRPMVVDIEQTARVLHEDMTKHGLPRELDRLQNLIDRANEKGLHRELDEYLQKREKLQSPEEQERLLHEIPQVIADDLESERKTPIVPEIKIKKDLITSTKASSVSKVPKAVADGFVSKATKLDMADHVKQENKSPKSIVSLDRASEVPLFNMAVDGTLSNCISGDTAAGFIQPPLWQSKKTEWPVCTDEHVKLRTQMESPREMDTSKSKMSNFIYSESSSFSEMDTSKSDYDNEQTKMPVIVNKEQDGYEPKIGMIFSNEDEAYDFYNDYAKFVGFTVRKSKYRRFADGSISQRTFVCGREGYRKLKDPSHVNKKNRRETRTGCQAMICFKIEKDAWVVYKFIPNHNHDLVKSCARAMLRSQRHVNEAYANMIEDMDNPGVKPCKVFSYFVEAARRVENVGFLKSDCLQSERSKNRNAGDAQSVINHFRSSQANDPAFVYTMQVDHENRMTNFFWRDGISRIDYNHFGDVVIFDTTYRTNKYNMACAPFIGVNHHKQSVLFGCAFLFDETTESFIWLFESFLEAMGGLQPKTIFTDQCQAMANAIKRVLPESQHRLCLWHIGQNAANHLSYYLGNSDFKVLFNRCLYNCGSEKEFEDVWTRLLTKVDISKCSWLKKIYDLRANWCPAFSKNYFSAGILSTQRSESMNNVFRTVTCKTMSLTQLVLRYEIFLERRRCSELQKDFECNQSTPPRVKQLTGMAAQVARVYTHVIFEEFYEELFESLSVAIEKINESGTFFCYKLVKSGDDKQYFVTFESANCLVECSCKMFESVGLLCLHALKVLNFHNIFHIPSQYILKRWTKDAKDSFSISDNGKQACEVSRQGINLRMSQIMRKAIYFATKGALTNETTKMAEDHLEQGIKSLERMFKNICMMDTTEVDDKISDEEKDEHNKLLDPQCVQARGVTNARLKSQLEKKRCKRNVSQAHNKSQGASTSKSPRHNHVYKGKASRVKDFSTSSTPPPTFCFPSLSQVSSANVAPPAFCFPYMCQVPYTQDPNIGVAGLDCSYDSQSSIQEMVHLNSSAQNLNGNFATQKID 1310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2455g00009 1310 MobiDBLite consensus disorder prediction 131 153 - -
Gabi2455g00009 1310 Pfam Plus-3 domain 172 268 IPR004343 GO:0003677
Gabi2455g00009 1310 Coils Coil 294 314 - -
Gabi2455g00009 1310 Pfam SWIB/MDM2 domain 54 119 IPR003121 -
Gabi2455g00009 1310 Pfam SWIM zinc finger 1035 1057 IPR007527 GO:0008270
Gabi2455g00009 1310 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 517 1139 IPR031052 GO:0006355
Gabi2455g00009 1310 MobiDBLite consensus disorder prediction 1198 1213 - -
Gabi2455g00009 1310 ProSiteProfiles SWIB/MDM2 domain profile. 38 121 IPR003121 -
Gabi2455g00009 1310 ProSiteProfiles Zinc finger SWIM-type profile. 1024 1060 IPR007527 GO:0008270
Gabi2455g00009 1310 MobiDBLite consensus disorder prediction 1184 1229 - -
Gabi2455g00009 1310 Gene3D SWIB/MDM2 domain 31 129 IPR036885 -
Gabi2455g00009 1310 Pfam MULE transposase domain 744 838 IPR018289 -
Gabi2455g00009 1310 ProSiteProfiles Plus3 domain profile. 167 293 IPR004343 GO:0003677
Gabi2455g00009 1310 SMART 26again6 1035 1062 IPR006564 GO:0008270
Gabi2455g00009 1310 Gene3D - 169 290 IPR036128 GO:0003677
Gabi2455g00009 1310 SUPERFAMILY SWIB/MDM2 domain 35 123 IPR036885 -
Gabi2455g00009 1310 SUPERFAMILY Plus3-like 168 291 IPR036128 GO:0003677
Gabi2455g00009 1310 SMART rtf1 167 270 IPR004343 GO:0003677
Gabi2455g00009 1310 Pfam FAR1 DNA-binding domain 539 625 IPR004330 -
Gabi2455g00009 1310 CDD SWIB-MDM2_like 44 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2455g00009 Gabi-Chr2455 159659 173703 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gabi2455g00009 Plus-3 6.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2455g00009 - - qsu:111986657 628.246