Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2452g00003 ATGGGTTACTTTGATGATGATCACAACAATGACTCATTTGGTTCAGACCAGAGAGATTTTAACAGAAGGATCTTGATCATGGCTATAGTTTCCTTATCAGTAGTGTTAGTTTTGGTCTTTGCACTTCACCTCTATGCTAGGTGTATCTTTAGACGCCAAGCTCGCAGCAGAGCCATTTACCAACTAAGCCTCACCGTGGCTCATGCTCATAACCAATCAATTGAACCACCCAACACAGGGCTTGACCCTGCCCTCATCACTTCTCTTCCCATGTTCATCTTCAAACGAAAGAAACCTCAACAAGAAGAAGAACCCCATCATCATCATAATGATGCCTCTGTTATAGAATGTGCCGTGTGCTTAAGTGCTCTAGAGGATGAAGAAATGGTGAGGTTGCTTCCAAATTGTAAACACACTTTCCATGTTGGTTGCATAGATACATGGCTAGCTTCACACTCCACGTGTCCCATTTGTCGAACCAAGGCTGAACCAAGGCTTGAACCGCAGCCACGTGAGGGTCCTACTAATTTGCCTCTCATGTTTGAACCGATAGAAGGAACTTCAGATGGTACTAATAACATTGTTTCTGGGTCACCCAAAATCAATGGTTCAAATTCACGGTTGAGTTCATTCAGAAGGATTCTTAGTAGGGAAAGATCATCAAGAAGAATCCAACCTTTTAGCCATGGTGATGATGTTGATCAAGATTTAGAGACGCAGTAA 723 0.4274 MGYFDDDHNNDSFGSDQRDFNRRILIMAIVSLSVVLVLVFALHLYARCIFRRQARSRAIYQLSLTVAHAHNQSIEPPNTGLDPALITSLPMFIFKRKKPQQEEEPHHHHNDASVIECAVCLSALEDEEMVRLLPNCKHTFHVGCIDTWLASHSTCPICRTKAEPRLEPQPREGPTNLPLMFEPIEGTSDGTNNIVSGSPKINGSNSRLSSFRRILSRERSSRRIQPFSHGDDVDQDLETQ 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2452g00003 240 CDD RING-H2_EL5-like 116 159 - -
Gabi2452g00003 240 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 15 167 - -
Gabi2452g00003 240 MobiDBLite consensus disorder prediction 186 211 - -
Gabi2452g00003 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 165 IPR013083 -
Gabi2452g00003 240 Pfam Ring finger domain 116 159 IPR001841 -
Gabi2452g00003 240 SMART ring_2 117 158 IPR001841 -
Gabi2452g00003 240 MobiDBLite consensus disorder prediction 183 240 - -
Gabi2452g00003 240 FunFam E3 ubiquitin-protein ligase ATL6 69 165 - -
Gabi2452g00003 240 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Gabi2452g00003 240 SUPERFAMILY RING/U-box 94 170 - -
Gabi2452g00003 240 MobiDBLite consensus disorder prediction 212 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2452g00003 Gabi-Chr2452 189750 190608 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2452g00003 4 238 C3H Transcription Factor Family AT2G42360 42.510 2.91e-53 170