Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2452g00002 ATGGGAATGAAGAGCACTGGGGGAGAGATTGTTCAAGTACAAGGAGGCCACATTGTTAGAGCCACAGGTAGAAAAGATCGTCATAGTAAGGTTTACACTGCAAAAGGTCCTCGTGATAGAAGGGTTAGGCTATCAGCACACACAGCCATTCAATTCTATGATGTTCAAGATCGTTTAGGCTATGACAGACCAAGCAAAGCTGTGGATTGGCTCATCAAGAAGGCCAAGTCTGCCATTGACAAGCTTGATGAGCTTCCTCCATGGAACCCAACTCCTAATAACACCACAGAAGCCACACAAGAGGGAGATCAAAATGCAGGGTCAAGTGAAATGGTAATTGCAGAACAATCTGAGTCTTCTGGTTACAATTTTCAGCTCCAAAGGCAATTAGATGAGCACCAAGATAACCATCACTCAGCATTCCTTCCATCACAAATTGACACTGATGCCATAGCTTTCTTTCCCACAACATCTGCCACTTCCTCCATCAATTTTCAAAGCTACCCACCTGACATAATCTCTAGAACAAACAACTCCTCAGAGGATCTTGGTCTATCTCTTCATTCCTTCCATGACCCTGGTTTGATTCATGGGCAATCCCAAGCAGGTGCAAATCAAACACCTTCAAATAACCAAACCCTTTTTGCTAGCTCAACTCCCATTGGTTTTGATCCTAATTACCACAGGATTGTGACTTGGAACAATGATGCAACCATAGATATGAACAGAACCGGGTTCATGGTCAATTCAACTGCATTTCTAGGCCAAGGTTCTGCATATTCCCAAAGGGGGACCCTTCAGTCCAGTTTTTCACCATCACTTCGTCCTTGGAATGACATTCCAATGGCTTCCTCAGAACATCACAAGTCCCAACCAATTCACCAAGCTTCCATCTTTGGAAGCAGGTTTCTATCCGATGCATTGCCAGGGTTTTGCATTCCTGCTAGAATTCAAGGTGAGGATGAGAGCCATGGAGTTGCTTCCGATAGGCCATCCTCTTCTTCACCTCATTCTCATCACTGA 1023 0.4448 MGMKSTGGEIVQVQGGHIVRATGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLDELPPWNPTPNNTTEATQEGDQNAGSSEMVIAEQSESSGYNFQLQRQLDEHQDNHHSAFLPSQIDTDAIAFFPTTSATSSINFQSYPPDIISRTNNSSEDLGLSLHSFHDPGLIHGQSQAGANQTPSNNQTLFASSTPIGFDPNYHRIVTWNNDATIDMNRTGFMVNSTAFLGQGSAYSQRGTLQSSFSPSLRPWNDIPMASSEHHKSQPIHQASIFGSRFLSDALPGFCIPARIQGEDESHGVASDRPSSSSPHSHH 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2452g00002 340 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 297 IPR005333 GO:0003700
Gabi2452g00002 340 MobiDBLite consensus disorder prediction 320 340 - -
Gabi2452g00002 340 Pfam TCP family transcription factor 23 130 IPR017887 -
Gabi2452g00002 340 MobiDBLite consensus disorder prediction 82 107 - -
Gabi2452g00002 340 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
Gabi2452g00002 340 MobiDBLite consensus disorder prediction 88 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2452g00002 Gabi-Chr2452 156850 159373 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2452g00002 8 340 TCP Transcription Factor Family AT3G15030 44.638 6.71e-78 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gabi2452g00002 TCP 2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2452g00002 - - gmx:100814907 537.339