Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi2451g00013 | ATGGGGCAAGGGCAATCCAAAAGCGAGCTTCTCTACCAGCAAGTCAGCTATGGCAACACGGAAGGAATCAAAGCCCTTCTAAGAGAAGGTGCAGGGCTGGAGTGGATGGACAGAGAAGGAAAGACACCCTTGATTGTTGCTTGTATGGATCCTGAGCATTATGATGTTGCTAGAACTTTGATTGAACTTGGAGCCAATATCAATGCATATCGTCCGGGTTGTCATGGTGGGACTCCTTTGCATCATGCAGCTAAAAGGGGCCTTGAAAGTATTGTTAAGTTACTTCTTTCGCATGGAGCCAATCCTTTGGTCATGAATGATGATTGCCAAACTGCTCTAGACATTGCTAGGGCCAAAGGGCACAGCAAAGTTGTTCGTACAATTGAGAGTCATCTATGTTTGTTCTCGGGTTGGCTATGGGAATTTCATGGACCTGGATTCCTAGAAGTAATAGCTCCTCAGTTGGTTTCCAGAAAAGTTTGGGTGGTTGTTTTACCGGTTGGCTCCCGTAATCTTGCGAGACCTTACAAGCTGGAGCTTGCCATCTATTCTAGTTTGCAGGATGCTCAACCACAAAAAATTATTTCTCTGTGGGAGGCCAATTTAGAAGAACCAAAGCTACATTTGTCTCCTCCTTCAGTGTTTGTTGTTGATAACACTACTGAAACACGCATTAAACTTGGACCTGCAAGTGAGAACAACATGCAACAACTTAAGTGGTTTTCTGATGCTTGCAAAGGAATTCCACGGGAAAATCCAGCATTTTTGCATAATAACGTGGCTACAGTTACCCCTACAACACCACCAGCTGCAGAAAATCCAGAGATGGCTATAGCTATCAATGCATCCATTCATTCTGCCATTCAGGAGAGGCCACCCCTTCTTGAAACCCATCCAAACTTTGAAGCAAGCTCTTCAAGTGGTGGAGTGAAAACAAGCAAGCTTGGTTTGCTGGTTACATATCCAAATACAAGTAGTAGTGAGTTTGTACATGAGCTTGTTCAAAGGCATGAAAATGTCTCTGTTGCCCATACTTGTAGTGGTCTTGATTTCATTCCATCAGCTCCTCCACTTGCTGATGATATTCCAGTAGTAGATGGCCCCATTCATTATCCATCCATTGATTTTAGCCCTGTTGATATTTCATCTCCATTTGTGGAGAAGTTACCCAAAGAAGAAGAAAAAAATTCTGTTGGAAGTGGTTCTTCTTGTGTGATATGTTTGGATGCTCCAGCAGAGGGAGCATGCATACCTTGTGGTCATGTTGCTGGATGCATGTCTTGCTTGAAGGAGGTTAAAGCAAAGAGATGGGGTTGCCCTGTATGTCGGGCCAAATTAGACCAGGTTATAAAGCTGTATCATGTTTGA | 1368 | 0.4364 | MGQGQSKSELLYQQVSYGNTEGIKALLREGAGLEWMDREGKTPLIVACMDPEHYDVARTLIELGANINAYRPGCHGGTPLHHAAKRGLESIVKLLLSHGANPLVMNDDCQTALDIARAKGHSKVVRTIESHLCLFSGWLWEFHGPGFLEVIAPQLVSRKVWVVVLPVGSRNLARPYKLELAIYSSLQDAQPQKIISLWEANLEEPKLHLSPPSVFVVDNTTETRIKLGPASENNMQQLKWFSDACKGIPRENPAFLHNNVATVTPTTPPAAENPEMAIAINASIHSAIQERPPLLETHPNFEASSSSGGVKTSKLGLLVTYPNTSSSEFVHELVQRHENVSVAHTCSGLDFIPSAPPLADDIPVVDGPIHYPSIDFSPVDISSPFVEKLPKEEEKNSVGSGSSCVICLDAPAEGACIPCGHVAGCMSCLKEVKAKRWGCPVCRAKLDQVIKLYHV | 455 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi2451g00013 | 455 | Pfam | Ankyrin repeats (many copies) | 78 | 126 | IPR002110 | GO:0005515 | |
| Gabi2451g00013 | 455 | Gene3D | - | 3 | 134 | IPR036770 | - | |
| Gabi2451g00013 | 455 | ProSiteProfiles | Ankyrin repeat profile. | 39 | 72 | IPR002110 | GO:0005515 | |
| Gabi2451g00013 | 455 | SMART | ANK_2a | 108 | 137 | IPR002110 | GO:0005515 | |
| Gabi2451g00013 | 455 | SMART | ANK_2a | 6 | 35 | IPR002110 | GO:0005515 | |
| Gabi2451g00013 | 455 | SMART | ANK_2a | 75 | 104 | IPR002110 | GO:0005515 | |
| Gabi2451g00013 | 455 | SMART | ANK_2a | 39 | 69 | IPR002110 | GO:0005515 | |
| Gabi2451g00013 | 455 | ProSiteProfiles | Ankyrin repeat region circular profile. | 75 | 101 | - | - | |
| Gabi2451g00013 | 455 | ProSiteProfiles | Ankyrin repeat profile. | 75 | 107 | IPR002110 | GO:0005515 | |
| Gabi2451g00013 | 455 | PANTHER | ROLLING PEBBLES, ISOFORM B | 25 | 223 | - | - | |
| Gabi2451g00013 | 455 | SUPERFAMILY | Ankyrin repeat | 9 | 133 | IPR036770 | - | |
| Gabi2451g00013 | 455 | SMART | ring_2 | 404 | 442 | IPR001841 | - | |
| Gabi2451g00013 | 455 | CDD | RING-HC_XBAT35-like | 400 | 453 | - | - | |
| Gabi2451g00013 | 455 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 383 | 454 | IPR013083 | - | |
| Gabi2451g00013 | 455 | Pfam | Zinc finger, C3HC4 type (RING finger) | 402 | 449 | - | - | |
| Gabi2451g00013 | 455 | ProSiteProfiles | Ankyrin repeat region circular profile. | 39 | 69 | - | - | |
| Gabi2451g00013 | 455 | ProSiteProfiles | Zinc finger RING-type profile. | 404 | 443 | IPR001841 | - | |
| Gabi2451g00013 | 455 | Pfam | Ankyrin repeats (3 copies) | 11 | 69 | IPR002110 | GO:0005515 | |
| Gabi2451g00013 | 455 | SUPERFAMILY | RING/U-box | 403 | 449 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi2451g00013 | Gabi-Chr2451 | 255777 | 265979 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi2451g00013 | 399 | 452 | C3H Transcription Factor Family | AT3G06140 | 35.185 | 1.29e-08 | 54.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi2451g00013 | - | - | gmx:100789309 | 660.603 |