Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2451g00010 ATGGCAGATCCTGCTAGTTATTGGAATCATGATCGAGATATTGAGCAAGCACTCATTGCTTTAAAAAAGGGCACTCAGTTAGTTAAGTATAGTCGAAAAGGGAAGCCAAAATTTTGTTCATTCAGGCTCTCACAGGATGAAACAAAACTGATTTGGATTTCTCATGGAAGGGAAAAGAGTCTGAATTTGTCTACTGTTTCGCGCATCATCCCAGGACAGAGAACAGCTGTCTTTAGAAGATATTTGCGCCCTGAAAAGGATTATCTTTCATTTTCACTTATTTATAAAAAAGGGGAGCGATCACTTGATCTGATCTGCAAGGACAAAGCTGAGGTAGAGGTATGGTTTTCAGGCCTCAAGGAATTAATTTCTACTGGACTGCGTAGTAGGAGTAGGAGCACTAGAAGTGAATTAACTGATGTGAAGTTTACCTCAAGCATTGCCCTTGGCAGGTTTTCTTGTGATTCAGTTTCTCGTGAGTCTACATCGTCTTATTCAGCAAAATCAGATGTGGGGTCAGAACATTCAAATATGCCAGTAAGGACAAGTGTTGGAGATGGTTCCCGTGTTAGTGTGTCAAGTATTAGCCACGCAAGTAGTGTAGCATCAGGACCAGATGACATAGAGTCTCTAGGTGATGTTTATATATGGGGAGAGGTTTGGTCAGATGCCATTTCCTCTGATGGATTAGGGACTCAAGTCCCTTCCAAAACAGATGTGCTGACTCCCAAGCCATTAGAATCTGATGTTGTTCTTGATGTTCATCAGATTGGTCCTGGTGTGCGTCATATTGCTCTTGTTACAAGGCAAGGAGAGGCTTTTACTTGGGGAGAGGACTCTGGTGGAAGGCTCGGTCATGGATTTTGTAATGATTATGGTAGACCACAACTTGTGGAGTCCCTGGTAGTTACTAATGTGGGTTTTGTTGCATGTGGTGAGTATCATTCATGTGCTGTAACAATGTCTGGTGATCTATTCACATGGGGAGATGGTACACATAATGCTGGAATTCTTGGCCATGGCACTGATATTAGCTACTATATACCAAAGAGGGTCGCTGGCCCTTTAGATGGACTTCAGGTTGTATCTGTTGCATGTGGCTCATGGCATTCAGCAGTGGCAACCTCCAATGGAAAACTGTTTACCTTTGGTGATGGAAAGTTTGGTGTCTTGGGCCATGGAGATAGGGAAAGTGTGTCATATCCAAAGGAGGTACAATTATTGAGTGGACTAAAGGCTATTATGGTTGCATGTGGAGTATGGCACACAGCAGCCATTATTGAGGTTATGGATCCTACTGGTACAAACGCTTCTTCATCCAAGAAGCATCTTTTCACATGGGGTGATGGCGACCAATATCGTTTGGGTCATGCTAACAAGGAAACCTACCTTCAACCAACATGTGTGGCTGCACTATCTGAATATAGTTTTCAACAGGTTGCATGTGGACACACTATGACTGTTGCACTCACTGCATCTGGTCATGTTTTTACTGTGGGAGGCACTGCAAATGGTCAACTAGGAAATCCAATGTCTGATGGAAAAGTGCCAATTCTAGTAAGAGATAAATTAGTAGGTGAGTTTGTGGAAGAAATATCATGTGGGGCATATCATGCCGCTGTTTTGACTTCAAGAAGTGAACTATATACTTGGGGGAAAGGTGCCAATGGAAGATTGGGACATGGAGACACAGAAGATCAGAAAACTCCAACATTGGTGGAATCCTTGAAGGACAGGCACATAAAGACTATAGCATGTGGATCCAGTTTTACAACTTGTATATGCATCCATAAGTGGATTTCTGGAGCTGACCAATCTGTTTGCTCTGGTTGTCGACAACCATTTGGTTTTACAAGAAAAAGGCATAATTGTTATCATTGTGGATTGGTATATTGCCATCCTTGTAGTTCAAAAAAGGCATCCAAAGCAGCATTGGCTCCAACACCTGGCAAACCACATCGTGTGTGCGATGCTTGTTATGCTAAGCTTAAAGCTTCTGAGTCTGTTAGTGCTTCCAATTTTAATAGAGATATTACTCGTGCTTCCAATTCTAGTTCCATTTATGGAAGGGAAAGATTTGACAGGGGAGAGGTAAGGCCTTCAAAAGTTCTCTTGTTTCCCATCACAGAGTCAGTAAAACTCCTTGACGTAGGGACTAGTAAGGCTGGAGGGTCTGCTCTAAATCCTTCACGTTTACAAATGAAAGATGCTGCATTTCCAAGTTCAGTGAGTGCCATGCAGAATGCTTCCAAGCCTGTTACTGTCATGCAGCCAAGTCACCCTCCACCTCCACCTCCACCTGCTAGTTCAAGACCTGTATCACCATATGCAAGAAGACCACCAAGCCCAACGCGTTCTACCTCCCCTGGATTTTCAAGAAGCCTTATTGATAGCTTAAAGAAGAAGAATGAGCTTTTGAATCAAGAAGTCTCAAAAATGCAAAACCAAGAGAGGAGTGACATTCAAGATATGAAGATTCAGGATCTTCAGAAAAATATTGAGGAAACCACCTCATTGGCTGGGGAGGAATCTTCTAAGCATATAGACGCAAAGGAATTTATTAAGTCTATGACTGATCAGTTGAGGGAAGTGACTGAGACATTGCCACCAGAGATTCCTGACAATGAAACCTTGAGAACCATACATGCTCAGGCTGAAGATTTTCTTAGAGAGAGAATAGAATTTGAATCTTCTTCCTTCCCATCAAGCTTTGACAACAGATCATCTGTACCTAGTACAGGATTGCCTCCACCAAGCTCAGAAAACAGTTCAAGAACACCTGATTCTTATAAGCCTATGAGAGAAGGAGAAGCATCAGTCATTGAACAATTTGAACCTGGTGTTTATGTCACGCTCTTAGTGCTACCTAATGGTAGCAAAGTTTTCAAACGTGTTAGATTCAGTAAGCGAAGATTTGATGAGCATCAGGCAGAAGAATGGTGGAACCAAAACAAAGATAGGGTGTTTGGGAAATATAGTCCAGCACCCATAAAGAATGCAATTCCTGGGTCATCTATCACCCCACCTCATGCTGAAGAGAATATTGAAGCATTACCTTCTTCCTAA 3066 0.4234 MADPASYWNHDRDIEQALIALKKGTQLVKYSRKGKPKFCSFRLSQDETKLIWISHGREKSLNLSTVSRIIPGQRTAVFRRYLRPEKDYLSFSLIYKKGERSLDLICKDKAEVEVWFSGLKELISTGLRSRSRSTRSELTDVKFTSSIALGRFSCDSVSRESTSSYSAKSDVGSEHSNMPVRTSVGDGSRVSVSSISHASSVASGPDDIESLGDVYIWGEVWSDAISSDGLGTQVPSKTDVLTPKPLESDVVLDVHQIGPGVRHIALVTRQGEAFTWGEDSGGRLGHGFCNDYGRPQLVESLVVTNVGFVACGEYHSCAVTMSGDLFTWGDGTHNAGILGHGTDISYYIPKRVAGPLDGLQVVSVACGSWHSAVATSNGKLFTFGDGKFGVLGHGDRESVSYPKEVQLLSGLKAIMVACGVWHTAAIIEVMDPTGTNASSSKKHLFTWGDGDQYRLGHANKETYLQPTCVAALSEYSFQQVACGHTMTVALTASGHVFTVGGTANGQLGNPMSDGKVPILVRDKLVGEFVEEISCGAYHAAVLTSRSELYTWGKGANGRLGHGDTEDQKTPTLVESLKDRHIKTIACGSSFTTCICIHKWISGADQSVCSGCRQPFGFTRKRHNCYHCGLVYCHPCSSKKASKAALAPTPGKPHRVCDACYAKLKASESVSASNFNRDITRASNSSSIYGRERFDRGEVRPSKVLLFPITESVKLLDVGTSKAGGSALNPSRLQMKDAAFPSSVSAMQNASKPVTVMQPSHPPPPPPPASSRPVSPYARRPPSPTRSTSPGFSRSLIDSLKKKNELLNQEVSKMQNQERSDIQDMKIQDLQKNIEETTSLAGEESSKHIDAKEFIKSMTDQLREVTETLPPEIPDNETLRTIHAQAEDFLRERIEFESSSFPSSFDNRSSVPSTGLPPPSSENSSRTPDSYKPMREGEASVIEQFEPGVYVTLLVLPNGSKVFKRVRFSKRRFDEHQAEEWWNQNKDRVFGKYSPAPIKNAIPGSSITPPHAEENIEALPSS 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2451g00010 1021 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 546 597 IPR000408 -
Gabi2451g00010 1021 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 377 IPR000408 -
Gabi2451g00010 1021 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 532 542 IPR000408 -
Gabi2451g00010 1021 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Gabi2451g00010 1021 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 416 426 IPR000408 -
Gabi2451g00010 1021 PRINTS Chromosome condensation regulator RCC1 signature 380 394 IPR000408 -
Gabi2451g00010 1021 PRINTS Chromosome condensation regulator RCC1 signature 323 339 IPR000408 -
Gabi2451g00010 1021 PRINTS Chromosome condensation regulator RCC1 signature 483 501 IPR000408 -
Gabi2451g00010 1021 PRINTS Chromosome condensation regulator RCC1 signature 541 562 IPR000408 -
Gabi2451g00010 1021 PRINTS Chromosome condensation regulator RCC1 signature 364 380 IPR000408 -
Gabi2451g00010 1021 PRINTS Chromosome condensation regulator RCC1 signature 273 289 IPR000408 -
Gabi2451g00010 1021 SMART fyve_4 596 665 IPR000306 GO:0046872
Gabi2451g00010 1021 ProSiteProfiles BRX domain profile. 938 993 IPR013591 -
Gabi2451g00010 1021 Pfam Regulator of chromosome condensation (RCC1) repeat 377 426 IPR000408 -
Gabi2451g00010 1021 Pfam Regulator of chromosome condensation (RCC1) repeat 444 490 IPR000408 -
Gabi2451g00010 1021 Pfam Regulator of chromosome condensation (RCC1) repeat 547 594 IPR000408 -
Gabi2451g00010 1021 Pfam Regulator of chromosome condensation (RCC1) repeat 493 542 IPR000408 -
Gabi2451g00010 1021 Pfam Regulator of chromosome condensation (RCC1) repeat 322 373 IPR000408 -
Gabi2451g00010 1021 Pfam Regulator of chromosome condensation (RCC1) repeat 271 319 IPR000408 -
Gabi2451g00010 1021 Coils Coil 796 819 - -
Gabi2451g00010 1021 FunFam PH, RCC1 and FYVE domains-containing protein 1 183 431 - -
Gabi2451g00010 1021 Pfam Transcription factor regulating root and shoot growth via Pin3 938 992 IPR013591 -
Gabi2451g00010 1021 MobiDBLite consensus disorder prediction 164 186 - -
Gabi2451g00010 1021 Gene3D - 13 130 IPR011993 -
Gabi2451g00010 1021 MobiDBLite consensus disorder prediction 756 779 - -
Gabi2451g00010 1021 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 378 429 IPR000408 -
Gabi2451g00010 1021 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 611 670 IPR013083 -
Gabi2451g00010 1021 MobiDBLite consensus disorder prediction 999 1021 - -
Gabi2451g00010 1021 Pfam FYVE zinc finger 598 664 IPR000306 GO:0046872
Gabi2451g00010 1021 SUPERFAMILY FYVE/PHD zinc finger 598 668 IPR011011 -
Gabi2451g00010 1021 CDD PH_PLC_plant-like 12 124 - -
Gabi2451g00010 1021 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 271 322 IPR000408 -
Gabi2451g00010 1021 MobiDBLite consensus disorder prediction 899 934 - -
Gabi2451g00010 1021 MobiDBLite consensus disorder prediction 899 929 - -
Gabi2451g00010 1021 Gene3D - 434 610 IPR009091 -
Gabi2451g00010 1021 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 602 664 IPR017455 -
Gabi2451g00010 1021 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 494 545 IPR000408 -
Gabi2451g00010 1021 SUPERFAMILY RCC1/BLIP-II 211 599 IPR009091 -
Gabi2451g00010 1021 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 442 493 IPR000408 -
Gabi2451g00010 1021 Pfam Transcription factor BRX N-terminal domain 842 877 IPR027988 -
Gabi2451g00010 1021 SUPERFAMILY PH domain-like 13 123 - -
Gabi2451g00010 1021 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 862 - -
Gabi2451g00010 1021 MobiDBLite consensus disorder prediction 743 793 - -
Gabi2451g00010 1021 Gene3D - 147 433 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2451g00010 Gabi-Chr2451 208499 215060 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2451g00010 935 993 Major Intrinsic Protein MIP AT1G31880 40.678 5.57e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2451g00010 - - gmx:100778984 1416.36