Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2451g00007 ATGGGTAGAGCCCCATGTTGTGAAAAAGTGGGATTGAAGAAGGGTCCTTGGACCCCAGAGGAAGATCAAATTCTCGTATCTTATATCCAAAAACATGGCCATAGCAACTGGCGTGCACTCCCAAAGCAAGCTGGACTATTAAGGTGTGGAAAAAGCTGCAGACTTCGCTGGATTAACTATTTAAGTCCTGATATCAAGAGAGGAAACTTCTCAAATGCAGAAGAGGAAACTATCATTAAGATGCATGAGATGATCGGGAACAGGTGGTCAGCAATAGCAGCAAAATTACCAGGAAGAACTGACAATGAAATAAAAAATGTGTGGCACACCCACTTGAAGAAGAGGGCATTGAAAACCAACCAACACAATTCAGAGAGAAAAATAGTTTCAAAACCAAAAATCATGCAATCTGATTCCAATTCCAGCACACCAACTCAATCAGAACATTCCAGTCTTTATTGCACTGAAATGGAGACTACATCAGCATGCACTTCTTCTAGTGATTTTTCATCACTCACCAATATTAGTGAAGGAAAACACATGAACAAAAACACCATCATGAGTGAAGACATAGAGTCTCTTGAGACAATGCCTGAAATTGATGAAAGCTTTTGGTCAGAGACAACAACAATGAATGATGAAAGATCAACCATGCCATCACATTCTTGGACAATCTCAAATGAACTATCACCTCAATATCCATTTCATTCAGTGGATACCTTCCAACAGAGTTATGGTAATAGTTCAAACTTTGATGATGGCATGGATTTTTGGTATGACTTGTTCATCAGATCAGGGGAGTCAATAGAATTGCCAGAGTTCTAA 825 0.3939 MGRAPCCEKVGLKKGPWTPEEDQILVSYIQKHGHSNWRALPKQAGLLRCGKSCRLRWINYLSPDIKRGNFSNAEEETIIKMHEMIGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRALKTNQHNSERKIVSKPKIMQSDSNSSTPTQSEHSSLYCTEMETTSACTSSSDFSSLTNISEGKHMNKNTIMSEDIESLETMPEIDESFWSETTTMNDERSTMPSHSWTISNELSPQYPFHSVDTFQQSYGNSSNFDDGMDFWYDLFIRSGESIELPEF 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2451g00007 274 CDD SANT 69 112 IPR001005 -
Gabi2451g00007 274 CDD SANT 16 61 IPR001005 -
Gabi2451g00007 274 FunFam MYB-related transcription factor 13 66 - -
Gabi2451g00007 274 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 217 - -
Gabi2451g00007 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gabi2451g00007 274 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi2451g00007 274 SMART sant 13 63 IPR001005 -
Gabi2451g00007 274 SMART sant 66 114 IPR001005 -
Gabi2451g00007 274 MobiDBLite consensus disorder prediction 133 150 - -
Gabi2451g00007 274 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi2451g00007 274 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi2451g00007 274 Gene3D - 69 149 - -
Gabi2451g00007 274 MobiDBLite consensus disorder prediction 121 150 - -
Gabi2451g00007 274 Gene3D - 13 66 - -
Gabi2451g00007 274 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi2451g00007 274 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gabi2451g00007 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2451g00007 Gabi-Chr2451 172273 175113 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2451g00007 1 274 MYB Transcription Factor Family AT2G31180 49.462 6.79e-84 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2451g00007 Myb_DNA-binding 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2451g00007 K09422 - gmx:100794205 371.318