Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi2450g00030 | ATGCAAATTATATCAATAATATCATTCTAACTTGACATGAATCAAAATCAGCTTCAGGCTCTACCTCTGCTAAGCAGCTTCCTTGGTTCAGCACCACAAGAAAGTTTACTAACAAACCAAAATCCAAAACCATGCCATAGTACTCAAGCAGAAGATGTCACAGTGGCCTTACACATAGGCCTCCCTGACAATTCAAGTGGCTCCACCAATAATAATGGATTTGTGAATGCAGCACCTCAAGTTCCTCACAATTACTGGATACCAACTCAAGAGCAGATCCTCATTGGATTCAGCCATTTCTCTTGTCCTGTCTGCCTCAAAACCTTTAATCGTTACAACAACCTTCAGATGCATATGTGGGGACATGGATCACAGTATCGTAGAGGACCAGACTCACTGAAACGAACTCATCCACGACCCTTGTTAGACATTCCATGCTATTGTTGCTCAATAGGATGCAAGAACAACATTGAGCACCCAAGAGCCAAGCCTTTGAAGGATTTTAGGACACTGCAAACACACTACAAGAGGAAGCATGGTGCGAAACCCTTTACATGTCGCAAGTGTGGGAAGCCTTTGGCTGTCAAGGGTGATTGGCGAACCCATGAGAAAAACTGTGGCAAGCGCTGGCTATGTGTTTGTGGTTCAGACTTCAAGCATAAGAGGTCACTTAAAGACCATATCAAAGCATTTGGCTTTGGCCATAGCCCTTTTTCTTCATCTGAGAGCATGTAA | 735 | 0.434 | MQIISIISFFXLDMNQNQLQALPLLSSFLGSAPQESLLTNQNPKPCHSTQAEDVTVALHIGLPDNSSGSTNNNGFVNAAPQVPHNYWIPTQEQILIGFSHFSCPVCLKTFNRYNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDIPCYCCSIGCKNNIEHPRAKPLKDFRTLQTHYKRKHGAKPFTCRKCGKPLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGFGHSPFSSSESM | 245 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi2450g00030 | 245 | Pfam | Zinc finger, C2H2 type | 101 | 120 | IPR013087 | - | |
Gabi2450g00030 | 245 | PANTHER | ZINC FINGER PROTEIN WIP2 | 18 | 240 | IPR043584 | GO:0003700|GO:0010468 | |
Gabi2450g00030 | 245 | SMART | c2h2final6 | 101 | 123 | IPR013087 | - | |
Gabi2450g00030 | 245 | SMART | c2h2final6 | 148 | 180 | IPR013087 | - | |
Gabi2450g00030 | 245 | SMART | c2h2final6 | 185 | 205 | IPR013087 | - | |
Gabi2450g00030 | 245 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 103 | 123 | IPR013087 | - | |
Gabi2450g00030 | 245 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 101 | 128 | IPR013087 | - | |
Gabi2450g00030 | 245 | FunFam | zinc finger protein WIP2-like | 100 | 123 | - | - | |
Gabi2450g00030 | 245 | SUPERFAMILY | beta-beta-alpha zinc fingers | 170 | 205 | IPR036236 | - | |
Gabi2450g00030 | 245 | Gene3D | Classic Zinc Finger | 146 | 232 | - | - | |
Gabi2450g00030 | 245 | Gene3D | Classic Zinc Finger | 100 | 123 | - | - | |
Gabi2450g00030 | 245 | FunFam | Zinc finger protein WIP2 | 154 | 236 | - | - | |
Gabi2450g00030 | 245 | SUPERFAMILY | beta-beta-alpha zinc fingers | 96 | 123 | IPR036236 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi2450g00030 | Gabi-Chr2450 | 339819 | 340759 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi2450g00030 | 54 | 242 | C2H2 Transcription Factor Family | AT1G34790 | 67.647 | 6.49e-98 | 286 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Gabi2450g00030 | zf-C2H2 | 0.0037 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gabi2450g00030 | - | - | gmx:547675 | 457.218 |