Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2450g00030 ATGCAAATTATATCAATAATATCATTCTAACTTGACATGAATCAAAATCAGCTTCAGGCTCTACCTCTGCTAAGCAGCTTCCTTGGTTCAGCACCACAAGAAAGTTTACTAACAAACCAAAATCCAAAACCATGCCATAGTACTCAAGCAGAAGATGTCACAGTGGCCTTACACATAGGCCTCCCTGACAATTCAAGTGGCTCCACCAATAATAATGGATTTGTGAATGCAGCACCTCAAGTTCCTCACAATTACTGGATACCAACTCAAGAGCAGATCCTCATTGGATTCAGCCATTTCTCTTGTCCTGTCTGCCTCAAAACCTTTAATCGTTACAACAACCTTCAGATGCATATGTGGGGACATGGATCACAGTATCGTAGAGGACCAGACTCACTGAAACGAACTCATCCACGACCCTTGTTAGACATTCCATGCTATTGTTGCTCAATAGGATGCAAGAACAACATTGAGCACCCAAGAGCCAAGCCTTTGAAGGATTTTAGGACACTGCAAACACACTACAAGAGGAAGCATGGTGCGAAACCCTTTACATGTCGCAAGTGTGGGAAGCCTTTGGCTGTCAAGGGTGATTGGCGAACCCATGAGAAAAACTGTGGCAAGCGCTGGCTATGTGTTTGTGGTTCAGACTTCAAGCATAAGAGGTCACTTAAAGACCATATCAAAGCATTTGGCTTTGGCCATAGCCCTTTTTCTTCATCTGAGAGCATGTAA 735 0.434 MQIISIISFFXLDMNQNQLQALPLLSSFLGSAPQESLLTNQNPKPCHSTQAEDVTVALHIGLPDNSSGSTNNNGFVNAAPQVPHNYWIPTQEQILIGFSHFSCPVCLKTFNRYNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDIPCYCCSIGCKNNIEHPRAKPLKDFRTLQTHYKRKHGAKPFTCRKCGKPLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGFGHSPFSSSESM 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2450g00030 245 Pfam Zinc finger, C2H2 type 101 120 IPR013087 -
Gabi2450g00030 245 PANTHER ZINC FINGER PROTEIN WIP2 18 240 IPR043584 GO:0003700|GO:0010468
Gabi2450g00030 245 SMART c2h2final6 101 123 IPR013087 -
Gabi2450g00030 245 SMART c2h2final6 148 180 IPR013087 -
Gabi2450g00030 245 SMART c2h2final6 185 205 IPR013087 -
Gabi2450g00030 245 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Gabi2450g00030 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Gabi2450g00030 245 FunFam zinc finger protein WIP2-like 100 123 - -
Gabi2450g00030 245 SUPERFAMILY beta-beta-alpha zinc fingers 170 205 IPR036236 -
Gabi2450g00030 245 Gene3D Classic Zinc Finger 146 232 - -
Gabi2450g00030 245 Gene3D Classic Zinc Finger 100 123 - -
Gabi2450g00030 245 FunFam Zinc finger protein WIP2 154 236 - -
Gabi2450g00030 245 SUPERFAMILY beta-beta-alpha zinc fingers 96 123 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2450g00030 Gabi-Chr2450 339819 340759 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2450g00030 54 242 C2H2 Transcription Factor Family AT1G34790 67.647 6.49e-98 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2450g00030 zf-C2H2 0.0037 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2450g00030 - - gmx:547675 457.218