Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2450g00003 ATGGCGCTAGTTAGTCTTTTCTGCTTTCCTTCAACAACGCATATCTCCACAGAACATATTCAGAATCCTCACCGCCAATCTCACCATTCTATCAACAATCTCTCTCTTTCTCAGCCACCCCATTCCCGTAATTTCCCGCGCCTGTCCCTCGAACATTCACCAAACGTTAGAACCAAACAAAGCATTAACTTCACTCTCGGATTTGCCTCTACCTCCCAAGAACAAGTCCTTCATTCTTCCCCATCAGATGTTCCCCCTGACGGCCAAGAAACTGAGGCACCCACTGAAGAGTTTTCACGGACAAGGTTGATTGCTCAAAACGTGCCTTGGACTTGTACAACTGAAGATATTCGTTCTTTGTTCGAGAGGCATGGAAAAGTCCTCGATGTTGAGCTCTCTATGTATAACAAGACCAGAAACAAGGGTTTGGCCTTTGTCGAAATGGGTGCCCCGGAAGATGCTATTGCCGCTATAAATAATCTCGAATCGTATGAGTTTGAGGGTCGCAAAATAAATGTCGAATATGCCCGGCCAAAGAAGAAGAAAATTCCTCCTCCTGTGAAACCAAAGCCAGCTGGAACATATAACTTGTTTGTTGCTAATTTGTCATATAAAGCGAACTCTGAGGATCTCATGGAGTTTTTTAATTCTGGAAGTGAAGGTGTTGTTTCCGCAGAGGTCATATTTTATGATAATACTAGAAAGCCTGCTGGTTTTGGATTTGTGTACTTTGAGTCCAAGCAAGAAGCTGAGGCAGCTCTTTCTGAGTTCCAAGGGAAGATATTTATGGGAAGGCCAATCAGGGTGGCATGGGACAAGCAATTTGTTAACGAAGCAGTGGAGGAGAGTGCAAGTTCTGGAGAGACATCTTCCACGCTGAGCGTGACTGATAAAGCTGAATGA 903 0.4441 MALVSLFCFPSTTHISTEHIQNPHRQSHHSINNLSLSQPPHSRNFPRLSLEHSPNVRTKQSINFTLGFASTSQEQVLHSSPSDVPPDGQETEAPTEEFSRTRLIAQNVPWTCTTEDIRSLFERHGKVLDVELSMYNKTRNKGLAFVEMGAPEDAIAAINNLESYEFEGRKINVEYARPKKKKIPPPVKPKPAGTYNLFVANLSYKANSEDLMEFFNSGSEGVVSAEVIFYDNTRKPAGFGFVYFESKQEAEAALSEFQGKIFMGRPIRVAWDKQFVNEAVEESASSGETSSTLSVTDKAE 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2450g00003 300 PANTHER OS02G0815200 PROTEIN 18 272 - -
Gabi2450g00003 300 MobiDBLite consensus disorder prediction 280 300 - -
Gabi2450g00003 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 274 IPR000504 GO:0003723
Gabi2450g00003 300 Gene3D - 57 183 IPR012677 -
Gabi2450g00003 300 SUPERFAMILY RNA-binding domain, RBD 77 187 IPR035979 GO:0003676
Gabi2450g00003 300 Gene3D - 186 292 IPR012677 -
Gabi2450g00003 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 178 IPR000504 GO:0003723
Gabi2450g00003 300 SUPERFAMILY RNA-binding domain, RBD 188 274 IPR035979 GO:0003676
Gabi2450g00003 300 CDD RRM_SF 197 269 - -
Gabi2450g00003 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 268 IPR000504 GO:0003723
Gabi2450g00003 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 171 IPR000504 GO:0003723
Gabi2450g00003 300 SMART rrm1_1 196 270 IPR000504 GO:0003723
Gabi2450g00003 300 SMART rrm1_1 102 174 IPR000504 GO:0003723
Gabi2450g00003 300 MobiDBLite consensus disorder prediction 75 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2450g00003 Gabi-Chr2450 47650 49705 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2450g00003 113 292 Eukaryotic Initiation Factors Gene Family AT3G16380 25.824 1.39e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2450g00003 - - qsa:O6P43_015341 319.701