Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2447g00027 ATGCAAGAAGCAGGGTTGGGAATGATGAGTGGTGGAGAAGTGTCACCATCCGGCGACCACCACCACCACTATCACCACCGTCAAATGAAGGCCGAGATAGCCACTCATCCACTCTATGAGCAGCTTCTGGCTGCACATGTGTCCTGTCTCCGAGTGGCCACTCCGATTGATCAGTTGCCACTGATCGACGCTCAGTTATCACAGTGCCACCATCTCCTTCGCTCTTATGCCTCACAACATGTTCATTCCCTCTCACCACATCACCAACAAGACCTTGACAACTTCCTGACACAATATTCGATAGTGTTGTGTACCTTCAAAGAACAACTTCAGCAACATGTCAGAGTCCATGCCGTGGAGGCTGTCATGGCGTGCCGTGATATTGAAAATACTTTACAAGCTCTAACAGGAGTCAGTTTGGGAGAAGGAACAGGTGCAACAATGTCAGATGATGAAGATGATTTGCAGATGGATATGTCTTTAGATCAATACAGCGCAGACGGGCATGACATGATGGGATTTGGTCTTCCTACAGAATCTGAAAGGTCTTTGATGGAAAGAGTTCGTCAGGAACTAAAGATTGAGCTGAAACAGGGTTTTAAGTCAAGAATTGAAGATGTTAGGGAGGAAATATTACGGAAACGAAGAGCTGGGAAGTTACCAGGTGACACAACATCGGTTTTGAAAATCTGGTGGCAACAACATGCTAAGTGGCCATACCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATTAATAATTGGTTCATCAATCAAAGGAAACGCAACTGGCACAGCAACTCTCAATCGGTTACCTCTCTGAAGTCCAAGCGCAAGAGGTAG 867 0.4637 MQEAGLGMMSGGEVSPSGDHHHHYHHRQMKAEIATHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLSQCHHLLRSYASQHVHSLSPHHQQDLDNFLTQYSIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGTGATMSDDEDDLQMDMSLDQYSADGHDMMGFGLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKIWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2447g00027 288 SUPERFAMILY Homeodomain-like 213 278 IPR009057 -
Gabi2447g00027 288 MobiDBLite consensus disorder prediction 1 27 - -
Gabi2447g00027 288 CDD homeodomain 214 275 IPR001356 GO:0003677
Gabi2447g00027 288 Pfam KNOX1 domain 28 70 IPR005540 GO:0003677|GO:0005634
Gabi2447g00027 288 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 48 275 - -
Gabi2447g00027 288 SMART KNOX2_2 82 137 IPR005541 GO:0003677|GO:0005634
Gabi2447g00027 288 SMART HOX_1 213 278 IPR001356 GO:0003677
Gabi2447g00027 288 Pfam KNOX2 domain 86 136 IPR005541 GO:0003677|GO:0005634
Gabi2447g00027 288 ProSiteProfiles 'Homeobox' domain profile. 211 274 IPR001356 GO:0003677
Gabi2447g00027 288 Pfam Homeobox KN domain 231 270 IPR008422 GO:0003677|GO:0006355
Gabi2447g00027 288 SMART KNOX1_2 27 71 IPR005540 GO:0003677|GO:0005634
Gabi2447g00027 288 ProSiteProfiles ELK domain profile. 191 211 IPR005539 GO:0003677
Gabi2447g00027 288 FunFam homeobox protein knotted-1-like 3 isoform X1 212 273 - -
Gabi2447g00027 288 Gene3D - 210 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2447g00027 Gabi-Chr2447 339872 344188 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2447g00027 1 287 Homeobox Transcription Factor Family AT1G62990 77.474 8.87e-162 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gabi2447g00027 KNOX2 1.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2447g00027 - - gmx:100803130 523.087