Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2447g00024 ATGACGTCGTATCAGGAGGAGCATGAGATGGATCAAGACGACGACGGAGGAACGACGGACCTCAGCACCAGCGACGGCGACCCGGAGAGAGACTCATCTCAAAGCAACATCAATGGAGTCTCCAAACACTGCATATTCAAGGATAACGCAAGCTACCAAGTTTTGCAGCTGAAGGAGGAGCCAACCGATTCGGACCCGGACCCGAACCCGAAGGCTCACCCTGTTCCATTAGGGGTTGTTCCGGTGGCGATGCAGATGCCTATACCAATATCCATGCCCACCCCGCTCAAAGCGACCAGGCGGTCCTCCACCAAGGACCGCCACACCAAGGTGGAGGGTCGTGGCCGCAGGATCCGAATACCCGCCACCTGCGCTGCTCGGATCTTTCAACTGACCCGAGAGTTAGGCCACAAGTCCGACGGCGAAACCGTCCGGTGGCTTCTAGAACACGCAGAGCAAGCCATCATCGAAGCCACCGGAACCGGCACCGTTCCGGCCATCGCCGTCTCAGTCGGGGGAGCTCTAAAAATCCCAACGACGTCGTCGAGCGAAAACCATAACCCCGCCGACAAAGCCGCCGCCGCCGCCGCAAACACCAAGAAGCGTAAACGGCCATCAAACAGCGAGTTCGTGGACCTAAACGACGCCGTTTCGGTGTCGTCCGGTCTAGCCCCGGTTCAATCGGCAGTACCACAAGGTCTGGTGCCGGTCTGGGCCGTGGGTAACACCAGCATGGTGGTCCCCACAAACACGTTCTGGATGATCCCTCCGAGCACCAACCAGTTGGGTGGAATTATGGGCTCGTCAAACCAGCAACCTCAGATATGGGCTTTATCTCCATCCATGACGCCCGTGTTTAACATGGCGGCAAGGCCCATATCGCCACTGGTAGCATCAACGAATATTCCAGAAGTTTGGCCCGTGACGGCGGGTTGCAGTAACACTTCTAACTCGGCAGTGAGTACAAGCACGATGGGGCCGAAGGTGGCAACGAAGTCCAGCATGGCACCCAGTGTTAGTTCTAGCGGTACTACTACAAGTGGTGGTAGCAAGGCTCAGATGTTAAGGGATTTTTCGTTGGAAATTTACGATAAGCAAGAGTTGCAATTCATGGGCCGGTCTGGGACTGAGACTCAACATACGCAAGCTTCCAATCAATGA 1161 0.5616 MTSYQEEHEMDQDDDGGTTDLSTSDGDPERDSSQSNINGVSKHCIFKDNASYQVLQLKEEPTDSDPDPNPKAHPVPLGVVPVAMQMPIPISMPTPLKATRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVSVGGALKIPTTSSSENHNPADKAAAAAANTKKRKRPSNSEFVDLNDAVSVSSGLAPVQSAVPQGLVPVWAVGNTSMVVPTNTFWMIPPSTNQLGGIMGSSNQQPQIWALSPSMTPVFNMAARPISPLVASTNIPEVWPVTAGCSNTSNSAVSTSTMGPKVATKSSMAPSVSSSGTTTSGGSKAQMLRDFSLEIYDKQELQFMGRSGTETQHTQASNQ 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2447g00024 386 MobiDBLite consensus disorder prediction 317 352 - -
Gabi2447g00024 386 MobiDBLite consensus disorder prediction 1 42 - -
Gabi2447g00024 386 MobiDBLite consensus disorder prediction 21 42 - -
Gabi2447g00024 386 Pfam TCP family transcription factor 103 202 IPR017887 -
Gabi2447g00024 386 ProSiteProfiles TCP domain profile. 104 158 IPR017887 -
Gabi2447g00024 386 MobiDBLite consensus disorder prediction 90 113 - -
Gabi2447g00024 386 MobiDBLite consensus disorder prediction 179 208 - -
Gabi2447g00024 386 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 64 363 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2447g00024 Gabi-Chr2447 313322 318520 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2447g00024 70 371 TCP Transcription Factor Family AT2G45680 46.364 5.05e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gabi2447g00024 TCP 4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2447g00024 - - pcin:129284605 439.884