Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2447g00016 ATGGACATTCTCAGACAATCATTTGATAAGTCGAATTCAGGGTACTTATCTAACCCTCCAATCACAACTCACTCCGATGAAGAAATCATCGTATTAGCATCAGCGAGGCCAAAGAAACGTGCGGGGCGTCGAATATTCAAGGAGACAAGGCACCCCGTGTACAGAGGAGTGCGTCGGAGGAACAACAACAAGTGGGTTTGCGAGGTTCGTGTTCCCAACGACAAATCAACTAGGATTTGGCTCGGAACATACCCAACTCCTGAGATGGCTGCACGTGCACACGATGTTGCCGCGCTCACTCTTCGGGGAAAGTCAGCTTGCCTTAACTTCGCTGACTCGACGTGGCGGTTCCCTTTGCCGGCATCGACCGATGCGGAGGAGATACGGAGAGTGGCGGCGGAGGCTGCAGAGGCATGTGCCGTTGAGGACAGTTACAAGCAGCAGAGTAGTGTGAATGCTGTTACTGATTGTGAAGTTTGCAGCAGTGACAGTGTCATTGAAAATGTCAATAATAAACCTTTGCAGGGACTGTATCTGGATGAAGTTCCATCGGTAGCAGCATTTGAGAACCTGCATGATTGGTTTAGGAGTATGGCTGATGAGCCTTTACGATCTCCGTCTCCTTTTGTAAGATATGGAAGGGACTGGAATGATGTGGATGTTGATGCTGAGGTCTCCTTGTGGAGTTTTACCATCTGA 699 0.4921 MDILRQSFDKSNSGYLSNPPITTHSDEEIIVLASARPKKRAGRRIFKETRHPVYRGVRRRNNNKWVCEVRVPNDKSTRIWLGTYPTPEMAARAHDVAALTLRGKSACLNFADSTWRFPLPASTDAEEIRRVAAEAAEACAVEDSYKQQSSVNAVTDCEVCSSDSVIENVNNKPLQGLYLDEVPSVAAFENLHDWFRSMADEPLRSPSPFVRYGRDWNDVDVDAEVSLWSFTI 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2447g00016 232 Gene3D AP2/ERF domain 53 112 IPR036955 GO:0003700|GO:0006355
Gabi2447g00016 232 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 17 230 IPR045277 GO:0003700
Gabi2447g00016 232 SUPERFAMILY DNA-binding domain 53 113 IPR016177 GO:0003677
Gabi2447g00016 232 FunFam Ethylene-responsive transcription factor 2 52 112 - -
Gabi2447g00016 232 CDD AP2 54 113 IPR001471 GO:0003700|GO:0006355
Gabi2447g00016 232 ProSiteProfiles AP2/ERF domain profile. 53 111 IPR001471 GO:0003700|GO:0006355
Gabi2447g00016 232 SMART rav1_2 53 117 IPR001471 GO:0003700|GO:0006355
Gabi2447g00016 232 Pfam AP2 domain 52 103 IPR001471 GO:0003700|GO:0006355
Gabi2447g00016 232 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Gabi2447g00016 232 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2447g00016 Gabi-Chr2447 241757 242455 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2447g00016 30 137 AP2-EREBP Transcription Factor Family AT1G12610 75.926 4.47e-55 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2447g00016 AP2 9.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2447g00016 - - pvu:PHAVU_003G212800g 294.664