Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2447g00014 ATGACGTCATCATCTTCTTCTTCCAAGAGGCACCCGGTGTACCATGGAATCCGGTGCCGGGGAGAAAAATGGGTGACCGAAATCCGGGAGCCACGTAAGACAACCCGCATATGGCTTGGCACATTCCTAACACCGGAGATGGCGGCTGCCGCCTATGACGTGGCGGCATTGGCGCTGAAAGGCGGGGAAGCCGTTCTCAACTTCCCTGACTCAGTTAGCAAGTATCCGGTGCCCGCATCGAAATCTCCTGCTGACATCCGCATCGCTGCCAATGCTGCAGCGGAACTAGTAAAGGCTGAAGCTAACCACAATAATGCATCATCAACTAATGTAGTTGAACCTGATGGTGTTTCTGATATTACTCCATTGTCTGAAACTGAGTTTCTGGATGAGGAAGCCTTGTTTTTCATGCCAAGTTTATTGGTAGAAATGGCTGAGGGAATGCTACTGTCCCCACCAAGAATGAGCCCACCACCGTCACCTGGGAATTATGGTGGAGAAAGTTTGTGGAACTATTTTTGA 522 0.5019 MTSSSSSSKRHPVYHGIRCRGEKWVTEIREPRKTTRIWLGTFLTPEMAAAAYDVAALALKGGEAVLNFPDSVSKYPVPASKSPADIRIAANAAAELVKAEANHNNASSTNVVEPDGVSDITPLSETEFLDEEALFFMPSLLVEMAEGMLLSPPRMSPPPSPGNYGGESLWNYF 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2447g00014 173 Coils Coil 89 109 - -
Gabi2447g00014 173 Gene3D AP2/ERF domain 13 70 IPR036955 GO:0003700|GO:0006355
Gabi2447g00014 173 ProSiteProfiles AP2/ERF domain profile. 13 69 IPR001471 GO:0003700|GO:0006355
Gabi2447g00014 173 SMART rav1_2 13 77 IPR001471 GO:0003700|GO:0006355
Gabi2447g00014 173 Pfam AP2 domain 12 61 IPR001471 GO:0003700|GO:0006355
Gabi2447g00014 173 SUPERFAMILY DNA-binding domain 13 71 IPR016177 GO:0003677
Gabi2447g00014 173 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 154 IPR045277 GO:0003700
Gabi2447g00014 173 CDD AP2 14 71 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2447g00014 Gabi-Chr2447 211279 211800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2447g00014 8 172 AP2-EREBP Transcription Factor Family AT5G52020 53.672 4.93e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2447g00014 AP2 2e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2447g00014 - - gmx:100778793 224.557