Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2447g00008 ATGGGAAAGGCGTCAAAGTGGTTTCGAGGACTCCTTGGTATGAGAAAAGCAGAGAGTAGCTCAGCTGGGAAGCCACCCAAAGAGAAACGACGATGGACCTTCGGGAAATCATACAAAGAAAAAGACAACAACAACATCATCATCAACAACAACAACAACCATGATGTTGTTGCTAACACTGTCCACCGCCACGTCACCTTATCAGAACACGTGGACAACAAGCACGCCATCGCGGTCGCTGCCGCCACTGCTGCGGTTGCGGAGGCGGCTGTGGCTGCTGCTCAAGCGGCTGCCGCCGTCGTCAGATTAACAAGCAGCAGCGGCAGGTGCGCGGAGGCCGCCGGAGGCCTCAGGATTCGCGAAGAATGGGCAGCCGTTAAGATCCAAGCCGCTTTTCGAGGCTGTTTGGCAAGGAGAGCACTACGAGCATTAAAAGGGTTGGTGAAGCTACAAGCATTGGTGAGAGGTCACATTGCGAGGAAGCGTACAGCAGAGATGCTGAAAAGAATGCAAGCACTCTTACGAACACAGGCACGAGTCTGTGCAGGACGTACCTTGCAGAACTCATATTCAAGTGCAAAGTCATCTACGTGCCACCTCCATGGTCCAGCAACACCAGACAAATTTGAAAGCCCTATCAGATCTAAGAGTTTGAAATATGAGCACTCACCTATACTCAAGAGAAATGGCTCCAAATCCTGTCTCCTGATAAATGGCAATCAAGAGAAACATGGGAATAGGCCAGCGAGTCAGGTAGATGAACAATCATGGAATCAAGGAAGATCATTGATGAGAACCTGTAGCACGAATGATGAAAAAAGTGATAGGATTCTTGAAATTGATTCTGGAAAACCCCACTTCACATCTAGACGTAGAAACCTCTTTCACTCCACCAGTCATGCTTTAGGTTCTGATCATCTTAGTAAGAGTTTGACCACTTCAAAAGAGTCAACATCTCTTCAATCTGGTCAAAGTCCATCTTGTGAAGTTCAGTCTTATAGCCAAGTAAAAATCAACGAGGTTGAGGAGAGTCCATTCTGCACTGCAGAAAATAGTCCCCAATTTTTATCTGCCACCTCTAAAGATGATGGCTACAAAAGAAGTCCTTTTACTCCTACCAGAAGTGATGGCTCAAGAAACTACCTTCGTGGTTATTCTGACTACCCAAGTTACATGGCATATACTGAGTCTTCAAAAGCAAAGGTTAGATCTCTGAGTGCCCCAAAACAAAGGCCTCTATATGAGAGGTCCACCTCATCTAATAGGTACTCACTCAATGGATTTGGTGAGTCAAGATTGGCTACACAGAAGACATCAGCATTGCATGCAAGCTTCACCAGCAAAGCCTATCCAGGTTCTGGTCGTTTGGACAAGCTTGGTATGCCTGTGGGGTATAGATACTGA 1404 0.4672 MGKASKWFRGLLGMRKAESSSAGKPPKEKRRWTFGKSYKEKDNNNIIINNNNNHDVVANTVHRHVTLSEHVDNKHAIAVAAATAAVAEAAVAAAQAAAAVVRLTSSSGRCAEAAGGLRIREEWAAVKIQAAFRGCLARRALRALKGLVKLQALVRGHIARKRTAEMLKRMQALLRTQARVCAGRTLQNSYSSAKSSTCHLHGPATPDKFESPIRSKSLKYEHSPILKRNGSKSCLLINGNQEKHGNRPASQVDEQSWNQGRSLMRTCSTNDEKSDRILEIDSGKPHFTSRRRNLFHSTSHALGSDHLSKSLTTSKESTSLQSGQSPSCEVQSYSQVKINEVEESPFCTAENSPQFLSATSKDDGYKRSPFTPTRSDGSRNYLRGYSDYPSYMAYTESSKAKVRSLSAPKQRPLYERSTSSNRYSLNGFGESRLATQKTSALHASFTSKAYPGSGRLDKLGMPVGYRY 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2447g00008 467 Gene3D - 120 174 - -
Gabi2447g00008 467 Pfam IQ calmodulin-binding motif 148 162 IPR000048 GO:0005515
Gabi2447g00008 467 Pfam IQ calmodulin-binding motif 123 142 IPR000048 GO:0005515
Gabi2447g00008 467 SMART iq_5 143 164 IPR000048 GO:0005515
Gabi2447g00008 467 SMART iq_5 120 142 IPR000048 GO:0005515
Gabi2447g00008 467 MobiDBLite consensus disorder prediction 310 329 - -
Gabi2447g00008 467 ProSiteProfiles IQ motif profile. 121 149 IPR000048 GO:0005515
Gabi2447g00008 467 MobiDBLite consensus disorder prediction 358 378 - -
Gabi2447g00008 467 PANTHER IQ-DOMAIN 5-RELATED 1 426 - -
Gabi2447g00008 467 MobiDBLite consensus disorder prediction 236 258 - -
Gabi2447g00008 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 167 IPR027417 -
Gabi2447g00008 467 Pfam Protein of unknown function (DUF4005) 352 425 IPR025064 -
Gabi2447g00008 467 ProSiteProfiles IQ motif profile. 145 172 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2447g00008 Gabi-Chr2447 84026 87056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2447g00008 1 467 IQD Protein Family AT4G23060 41.887 9.00e-77 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2447g00008 - - gmx:100793587 552.747