Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2447g00006 ATGGCGACGACAAGGTCACCGAACCGTTCCTACGAGGACGCCGCCGATCCGACTCCGTTCATCGGCAATTCATCTGACGAATCGAACTCCGGCCGTCGTTTGGTTCGCCGGCAGAGCCTGCGGCAGGCTGCGCGGTTCCTGAGGCAGGCGAGTGGGCGGAGGATGTTGCGGGAGCCGTCGATGGTGGTGAGGGAGACGGCGGCGGAGCAAATTGAAGAGAGGCAGAGCGATTGGGCCTATTCGAAGCCCGTGGTGGTCCTTGATATTCTCTGGAACTTGGCGTTCATCGTTGCGGGGGCTACGGTGTTGGTTCTGAGTCGGAATGAGTCTCCGAGCGTTCCTCTCAGGTTGTGGATTGTAGGGTACGCTCTGCAGTGCATCCTTCACGTTGTGTGCGTCTGCGTCGAGTATCGGAGGCGGAGGCGGGAACGGTTGAACTCCAATAACGCCGTGCTAGACGGCGTCGTTGGAGTTGGGGGCAGTGGGGATTTGAGCTCGGGTTCTATGGATGGTTCTGGGCAGTACATGTCATTGTCGCAATTCGAAGAGGATGGTGTAAGTATGGCGAAGCATTTGGAATCAGCCAACACAATGTTTTCTTTTATTTGGTGGGTCGTTGGATTCTATTGGGTATCAGCTGATGGTCAAGCTTTGGTCCAAGATTCTCCTCAGCTTTACTGGTTATGTATAGTCTTCCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGTATTGCACTGGCATGCATCATTGGTATCGCTGTTTGCTGTTGTCTTCCATGTATCATTGCACTTCTGTACGCAGTTGCAGACCAGGCAAGAGCATCAAAAGAAGACATTGAGCAGTTGTCAAAATTCAAATTCCGAAGAACTGAAAGTAATGAGAAACTTGCTGGTAGTACACAAGGACCAGTTGGAGGAATAATGACTGAATGTCATGCTGATTCTCCTATTGAACATGTTCTTTCAGATGAGGATGCGGAATGTTGCATCTGCCTTTCTGCTTATGATGACGGGGTTGAACTGAGACAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGACAAATGGCTGTATATTAATGCTACTTGCCCCCTCTGCAAGTATAACATCTTGAAAACTAGCAGCCCTGGTCAAGAAGTGTAG 1149 0.5039 MATTRSPNRSYEDAADPTPFIGNSSDESNSGRRLVRRQSLRQAARFLRQASGRRMLREPSMVVRETAAEQIEERQSDWAYSKPVVVLDILWNLAFIVAGATVLVLSRNESPSVPLRLWIVGYALQCILHVVCVCVEYRRRRRERLNSNNAVLDGVVGVGGSGDLSSGSMDGSGQYMSLSQFEEDGVSMAKHLESANTMFSFIWWVVGFYWVSADGQALVQDSPQLYWLCIVFLGFDVFFVVFCIALACIIGIAVCCCLPCIIALLYAVADQARASKEDIEQLSKFKFRRTESNEKLAGSTQGPVGGIMTECHADSPIEHVLSDEDAECCICLSAYDDGVELRQLPCGHHFHCACVDKWLYINATCPLCKYNILKTSSPGQEV 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2447g00006 382 ProSiteProfiles Zinc finger RING-type profile. 328 369 IPR001841 -
Gabi2447g00006 382 PANTHER TARGET OF ERK KINASE MPK-1 51 374 - -
Gabi2447g00006 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 380 IPR013083 -
Gabi2447g00006 382 MobiDBLite consensus disorder prediction 1 34 - -
Gabi2447g00006 382 CDD RING-H2_RNF6-like 327 369 - -
Gabi2447g00006 382 SMART ring_2 328 368 IPR001841 -
Gabi2447g00006 382 Pfam Ring finger domain 327 369 IPR001841 -
Gabi2447g00006 382 SUPERFAMILY RING/U-box 318 374 - -
Gabi2447g00006 382 FunFam E3 ubiquitin-protein ligase At1g12760 314 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2447g00006 Gabi-Chr2447 58137 63245 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2447g00006 18 374 C3H Transcription Factor Family AT1G68070 48.066 8.60e-114 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2447g00006 - - gmx:100779757 624.009