Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2447g00004 ATGGCGACGACAAGGTCACCGAACCGTTCCTACGAGGACGCCGCCGATCCGACTCCGTTCATCGGCAATTCATCTGACGAATCGAACTCCGGCCGTCGTTTGGTTCGCCGGCAGAGCCTGCGGCAGGCTGCGCGGTTCCTGAGGCAGGCGAGTGGGCGGAGGATGTTGCGGGAGCCGTCGATGGTGGTGAGGGAGACGGCGGCGGAGCAAATTGAAGAGAGGCAGAGCGATTGGGCCTATTCGAAGCCCGTGGTGGTCCTTGATATTCTCTGGAACTTGGCGTTCATCGTTGCGGGGGCTACGGTGTTGGTTCTGAGTCGGAATGAGTCTCCGAGCGTTCCTCTCAGGTTGTGGATTGTAGGGTACGCTCTGCAGTGCATCCTTCACGTTGTGTGCGTCTGCGTCGAGTATCGGAGGCGGAGGCGGGAACGGTTGAACTCCAATAACGCCGTGCTAGACGGCGTCGTTGGAGTTGGGGGCAGTGGGGATTTGAGCTCGGGTTCTATGGATGGTTCTGGGCAGTACATGTCATTGTCGCAATTCGAAGAGGATGGTGTAAGCAGTATGGCGAAGCATTTGGAATCAGCCAACACAATGTTTTCTTTTATTTGGTGGGTCGTTGGATTCTATTGGGTATCAGCTGATGGTCAAGCTTTGGTCCAAGATTCTCCTCAGCTTTACTGGTTATGTATAGTCTTCCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGTATTGCACTGGCATGCATCATTGGTATCGCTGTTTGCTGTTGTCTTCCATGTATCATTGCACTTCTGTACGCAGTTGCAGACCAGGAAGGAGCATCAAAAGAAGACATTGAGCAGTTGTCAAAATTCAAATTCCGAAGAACTGAAAGTAATGAGAAACTTGCTGGTAGTACACAAGGACCAGTTGGAGGAATAATGACTGAATGTCATGCTGATTCTCCTATTGAACATGTTCTTTCAGATGAGGATGCGGAATGTTGCATCTGCCTTTCTGCTTATGATGACGGGGTTGAACTGAGACAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGACAAATGGCTGTATATTAATGCTACTTGCCCCCTCTGCAAGTATAACATCTTGAAAACTAGCAGCCCTGGTCAAGAAGTGTAG 1152 0.5043 MATTRSPNRSYEDAADPTPFIGNSSDESNSGRRLVRRQSLRQAARFLRQASGRRMLREPSMVVRETAAEQIEERQSDWAYSKPVVVLDILWNLAFIVAGATVLVLSRNESPSVPLRLWIVGYALQCILHVVCVCVEYRRRRRERLNSNNAVLDGVVGVGGSGDLSSGSMDGSGQYMSLSQFEEDGVSSMAKHLESANTMFSFIWWVVGFYWVSADGQALVQDSPQLYWLCIVFLGFDVFFVVFCIALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRRTESNEKLAGSTQGPVGGIMTECHADSPIEHVLSDEDAECCICLSAYDDGVELRQLPCGHHFHCACVDKWLYINATCPLCKYNILKTSSPGQEV 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2447g00004 383 CDD RING-H2_RNF6-like 328 370 - -
Gabi2447g00004 383 ProSiteProfiles Zinc finger RING-type profile. 329 370 IPR001841 -
Gabi2447g00004 383 PANTHER TARGET OF ERK KINASE MPK-1 51 375 - -
Gabi2447g00004 383 SUPERFAMILY RING/U-box 319 375 - -
Gabi2447g00004 383 MobiDBLite consensus disorder prediction 1 33 - -
Gabi2447g00004 383 FunFam E3 ubiquitin-protein ligase At1g12760 315 380 - -
Gabi2447g00004 383 SMART ring_2 329 369 IPR001841 -
Gabi2447g00004 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 381 IPR013083 -
Gabi2447g00004 383 Pfam Ring finger domain 328 370 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2447g00004 Gabi-Chr2447 58136 63245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2447g00004 18 375 C3H Transcription Factor Family AT1G68070 48.485 9.41e-116 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2447g00004 - - gmx:100779757 624.78