Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2445g00034 ATGGCTTTAGAGCAGAAATTATCGTTGGGTCAGAATACGAACCCAGTTGACGAAGCAGACGGAAACGCTAACGGCGTGGATGCTCGGCTGGCGTCGACGGAAGGAGGAGATGAAGGAGGGAAAGCGCCGAGACTGCCCCGCTGGACAAGGCAGGAGATTCTGGTTCTGATACAGGGAAAGAGAGACGCAGAGAACAAGTTTAGGAGGGGTCGCACCGCGGGATTGCCATTCGGGTCGGGTCAGGTGGAGCCGAAATGGGCATCGGTGTCTTCGTACTGCCGAAAGCATGGAGTGAACAGGGGTCCAGTTCAGTGCCGGAAAAGGTGGAGCAATTTGGCCGGAGACTACAAGAAGATCAAAGAATGGGAGTCTCAAATAAGGGAGGAGACGGAATCGTTTTGGGTCATGAGAAACGATTTAAGGAGAGAGAGGAAATTGCCCGGATTTTTCGACAAGGAGGTCTATGATATTCTAGATTCAGGGTCGCAGGCGCCGGCGTTAGCTCTTGCTCTGTCATCGACTCCAGCAACAGTGACGGAGCCGGTTGGCAATGACAAGGACAAGGACAAGGACAAGGACAACAAAAGAGTGGCGGATGAGGATTACACTGAGCCACACCTGTATGATAGTAATAGGAGCGCGGTTGGTGAGGATGGCTTGTTCTCAGATTTTGAACAAGAAGAAGTGGGTGCCAGTCCTGAGAAGAAGAATGTTTTGGCGCCTTCTAAGGACATTCCTGCTCCTATTCCTATCTCAGAGAAGCAATATCAACCACTCCTCCCTGGCTGCCAAGGTGAAGGTGTGAACAATGACAAACAGCAAGCTTCAAATCCCGAAATGGGTTCTGCAGCTCAAGGAGAATTGAGAAGGAAACGGTTAGCAACAGAAGGAGAGGAAATGGGTTCTGCATCTCAAGGACAACGGAAAAGGAAACGGTTAGCAACAGACGGAGAGGAGGAAACTTCGCAATATCAATTAATTGATGTCTTAGAAAGAAATGGCAAGATGCTAAGCGCTCAGCTCGAAGTGCAAAATATAAATTTCCAGTTGGATCGGGAGCAGCGGAAAGACCACGCAAATAACTTGGTTGCTGTACTTGATAAGCTTGCAGATGCTCTGGGGAGAATCGCTGAGAAATTATAG 1143 0.4943 MALEQKLSLGQNTNPVDEADGNANGVDARLASTEGGDEGGKAPRLPRWTRQEILVLIQGKRDAENKFRRGRTAGLPFGSGQVEPKWASVSSYCRKHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIREETESFWVMRNDLRRERKLPGFFDKEVYDILDSGSQAPALALALSSTPATVTEPVGNDKDKDKDKDNKRVADEDYTEPHLYDSNRSAVGEDGLFSDFEQEEVGASPEKKNVLAPSKDIPAPIPISEKQYQPLLPGCQGEGVNNDKQQASNPEMGSAAQGELRRKRLATEGEEMGSASQGQRKRKRLATDGEEETSQYQLIDVLERNGKMLSAQLEVQNINFQLDREQRKDHANNLVAVLDKLADALGRIAEKL 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2445g00034 380 MobiDBLite consensus disorder prediction 182 207 - -
Gabi2445g00034 380 MobiDBLite consensus disorder prediction 285 318 - -
Gabi2445g00034 380 Pfam Myb/SANT-like DNA-binding domain 47 136 IPR044822 -
Gabi2445g00034 380 Gene3D - 48 118 - -
Gabi2445g00034 380 ProSiteProfiles Myb-like domain profile. 47 113 IPR001005 -
Gabi2445g00034 380 MobiDBLite consensus disorder prediction 173 321 - -
Gabi2445g00034 380 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 14 380 - -
Gabi2445g00034 380 MobiDBLite consensus disorder prediction 1 44 - -
Gabi2445g00034 380 MobiDBLite consensus disorder prediction 1 19 - -
Gabi2445g00034 380 CDD GT1 46 120 - -
Gabi2445g00034 380 MobiDBLite consensus disorder prediction 267 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2445g00034 Gabi-Chr2445 283879 287216 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2445g00034 30 144 Trihelix Transcription Factor Family AT1G13450 31.624 6.54e-07 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gabi2445g00034 Myb_DNA-bind_4 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2445g00034 - - pcin:129308058 502.671