Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2445g00030 ATGGGGTGTTTTTCGTGTTTCGATTCGAGGGAGGATGAGAAGCTGAATCCTAATCCTCAGCATGAGAGCCATCATCATCATCATCTTGATCATCATCATAAGCTCCCCTCCAATATTTCCAGATTTCCCTCTGTCTCTGGAGAAGACAAGCTACGCTCAACAACTAATGGAGACTCCAAAAGGGAATTGCCTGCTCTCAAGGACGGACCCGCTGTCCAAATTGCCGCTCAAACTTTTACTTTCCGTGAACTTGCAGCCGCAACCAAAAACTTCAAGCCCCAATCCTTTATAGGGGAAGGTGGCTTTGGAAGGGTCTACAAGGGACGCCTCGAAACCACCGGTCAGGTTGTTGCTGTTAAACAGTTAGACAGAAACGGTCTTCAGGGTAATCGGGAATTCCTTGTGGAGGTTCTCATGCTCAGTCTTCTGCACCACCCTAACCTTGTGAATCTTATTGGATACTGTGCGGATGGGGACCAACGCCTTCTAGTTTATGAATTTATGCCATTGGGATCATTGGAAGACCACCTTCACGATCTTCCCCCTGATAAGGAGCCATTAGATTGGAACACTAGGATGAAAATAGCTGCTGGTGCCGCAAAAGGATTGGAATACCTACATGACCAGGCAAATCCTCCAGTCATTTATAGGGACTTCAAGTCATCGAATATATTACTTGATGAAGGTTATCATCCAAAGCTTTCTGACTTTGGTCTTGCGAAGCTTGGTCCTGTTGGTGACAAATCACACGTTTCCACCCGTGTCATGGGAACTTATGGTTACTGTGCTCCTGAGTATGCTATGACTGGACAACTGACTGTGAAATCTGACGTATATAGTTTTGGGGTAGTATTCTTGGAGCTGATTACTGGCCGTAAGGCCATTGACAGCACCCAGCCTCATGGAGAACAAAACCTTGTCACATGGGCACGTCCGCTGTTCAATGACCGCAGGAAGTTTCCAAAGTTAGCAGATCCGCAGCTGCAGGGACGGTATCCCATGCGTGGTCTTTACCAAGCTCTAGCTGTGGCATCAATGTGTATTCAAGAACAGGCAGCAGCACGTCCTCTGATTGGGGATGTGGTAACGGCCCTCTCTTATCTGGCCAACCAGGCATATGACCCTAACAATGCTGGGCATGGTTACAGGGGAGCTGGTGATGATAAAAGGAACAGAGATGATAAAGGTGGAAGAATATTGAAAAATGATGAAGGTGGAGGATCTGGACGCAGATGGGATTTGGAAGGATCTGAGAAAGATGACTCCCCGCGTGAAACTGCAAGGATGTTAAACAGGGATCTTGATAGAGAACGTGCCGTGGCTGAAGCCAAGATGTGGGGAGAGAACTGGAGAGAAAAAAGACGACAAAGTGTGCAGGGCAGTTTTGATGGTTCTAACACCTAG 1404 0.4729 MGCFSCFDSREDEKLNPNPQHESHHHHHLDHHHKLPSNISRFPSVSGEDKLRSTTNGDSKRELPALKDGPAVQIAAQTFTFRELAAATKNFKPQSFIGEGGFGRVYKGRLETTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDQANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTQPHGEQNLVTWARPLFNDRRKFPKLADPQLQGRYPMRGLYQALAVASMCIQEQAAARPLIGDVVTALSYLANQAYDPNNAGHGYRGAGDDKRNRDDKGGRILKNDEGGGSGRRWDLEGSEKDDSPRETARMLNRDLDRERAVAEAKMWGENWREKRRQSVQGSFDGSNT 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2445g00030 467 ProSitePatterns Protein kinases ATP-binding region signature. 97 120 IPR017441 GO:0005524
Gabi2445g00030 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Gabi2445g00030 467 SUPERFAMILY Protein kinase-like (PK-like) 73 365 IPR011009 -
Gabi2445g00030 467 Pfam Protein kinase domain 94 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2445g00030 467 MobiDBLite consensus disorder prediction 376 433 - -
Gabi2445g00030 467 MobiDBLite consensus disorder prediction 11 66 - -
Gabi2445g00030 467 Gene3D Transferase(Phosphotransferase) domain 1 168 381 - -
Gabi2445g00030 467 ProSiteProfiles Protein kinase domain profile. 91 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2445g00030 467 CDD STKc_IRAK 97 365 - -
Gabi2445g00030 467 MobiDBLite consensus disorder prediction 383 433 - -
Gabi2445g00030 467 Gene3D Phosphorylase Kinase; domain 1 75 167 - -
Gabi2445g00030 467 FunFam Serine/threonine-protein kinase PBS1 65 167 - -
Gabi2445g00030 467 FunFam Serine/threonine-protein kinase PBS1 168 382 - -
Gabi2445g00030 467 PANTHER OS07G0668900 PROTEIN 3 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2445g00030 Gabi-Chr2445 207706 213049 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2445g00030 1 455 Glycoside Hydrolase AT3G07070 55.895 1.39e-169 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gabi2445g00030 Pkinase 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2445g00030 K13430 - tcc:18608901 806.979