Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2445g00029 ATGGGGTGTTTTTCGTGTTTCGATTCGAGGGAGGATGAGAAGCTGAATCCTAATCCTCAGCATGAGAGCCATCATCATCATCATCTTGATCATCATCATAAGCTCCCCTCCAATATTTCCAGATTTCCCTCTGTCTCTGACAAGCTACGCTCAACAACTAATGGAGACTCCAAAAGGGAATTGCCTGCTCTCAAGGACGGACCCGCTGTCCAAATTGCCGCTCAAACTTTTACTTTCCGTGAACTTGCAGCCGCAACCAAAAACTTCAAGCCCCAATCCTTTATAGGGGAAGGTGGCTTTGGAAGGGTCTACAAGGGACGCCTCGAAACCACCGGTCAGGTTGTTGCTGTTAAACAGTTAGACAGAAACGGTCTTCAGGGTAATCGGGAATTCCTTGTGGAGGTTCTCATGCTCAGTCTTCTGCACCACCCTAACCTTGTGAATCTTATTGGATACTGTGCGGATGGGGACCAACGCCTTCTAGTTTATGAATTTATGCCATTGGGATCATTGGAAGACCACCTTCACGATCTTCCCCCTGATAAGGAGCCATTAGATTGGAACACTAGGATGAAAATAGCTGCTGGTGCCGCAAAAGGATTGGAATACCTACATGACCAGGCAAATCCTCCAGTCATTTATAGGGACTTCAAGTCATCGAATATATTACTTGATGAAGGTTATCATCCAAAGCTTTCTGACTTTGGTCTTGCGAAGCTTGGTCCTGTTGGTGACAAATCACACGTTTCCACCCGTGTCATGGGAACTTATGGTTACTGTGCTCCTGAGTATGCTATGACTGGACAACTGACTGTGAAATCTGACGTATATAGTTTTGGGGTAGTATTCTTGGAGCTGATTACTGGCCGTAAGGCCATTGACAGCACCCAGCCTCATGGAGAACAAAACCTTGTCACATGGGCACGTCCGCTGTTCAATGACCGCAGGAAGTTTCCAAAGTTAGCAGATCCGCAGCTGCAGGGACGGTATCCCATGCGTGGTCTTTACCAAGCTCTAGCTGTGGCATCAATGTGTATTCAAGAACAGGCAGCAGCACGTCCTCTGATTGGGGATGTGGTAACGGCCCTCTCTTATCTGGCCAACCAGGCATATGACCCTAACAATGCTGGGCATGGTTACAGGGGAGCTGGTGATGATAAAAGGAACAGAGATGATAAAGGTGGAAGAATATTGAAAAATGATGAAGGTGGAGGATCTGGACGCAGATGGGATTTGGAAGGATCTGAGAAAGATGACTCCCCGCGTGAAACTGCAAGGATGTTAAACAGGGATCTTGATAGAGAACGTGCCGTGGCTGAAGCCAAGATGTGGGGAGAGAACTGGAGAGAAAAAAGACGACAAAGTGTGCAGGGCAGTTTTGATGGTTCTAACACCTAG 1398 0.4728 MGCFSCFDSREDEKLNPNPQHESHHHHHLDHHHKLPSNISRFPSVSDKLRSTTNGDSKRELPALKDGPAVQIAAQTFTFRELAAATKNFKPQSFIGEGGFGRVYKGRLETTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDQANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTQPHGEQNLVTWARPLFNDRRKFPKLADPQLQGRYPMRGLYQALAVASMCIQEQAAARPLIGDVVTALSYLANQAYDPNNAGHGYRGAGDDKRNRDDKGGRILKNDEGGGSGRRWDLEGSEKDDSPRETARMLNRDLDRERAVAEAKMWGENWREKRRQSVQGSFDGSNT 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2445g00029 465 Gene3D Phosphorylase Kinase; domain 1 73 165 - -
Gabi2445g00029 465 FunFam Serine/threonine-protein kinase PBS1 63 165 - -
Gabi2445g00029 465 Gene3D Transferase(Phosphotransferase) domain 1 166 379 - -
Gabi2445g00029 465 MobiDBLite consensus disorder prediction 381 431 - -
Gabi2445g00029 465 FunFam Serine/threonine-protein kinase PBS1 166 380 - -
Gabi2445g00029 465 PANTHER OS07G0668900 PROTEIN 3 375 - -
Gabi2445g00029 465 CDD STKc_IRAK 95 363 - -
Gabi2445g00029 465 MobiDBLite consensus disorder prediction 374 431 - -
Gabi2445g00029 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Gabi2445g00029 465 ProSiteProfiles Protein kinase domain profile. 89 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2445g00029 465 ProSitePatterns Protein kinases ATP-binding region signature. 95 118 IPR017441 GO:0005524
Gabi2445g00029 465 Pfam Protein kinase domain 92 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2445g00029 465 SUPERFAMILY Protein kinase-like (PK-like) 71 363 IPR011009 -
Gabi2445g00029 465 MobiDBLite consensus disorder prediction 11 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2445g00029 Gabi-Chr2445 207706 213050 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2445g00029 1 453 Glycoside Hydrolase AT3G07070 55.921 2.00e-169 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gabi2445g00029 Pkinase 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2445g00029 K13430 - tcc:18608901 809.29