Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2445g00022 ATGGCGGCTGCATTTACACTTACAACACCAACACTGTCAAATGTTCGAGAAAGCAGAATCATGAAAATGGGAGCTTTGAACCCTAACCCTATGTTTAGGGTGGGGTTTCCTCAGGGGCGTGTGAGTGTGAGTGTGAGTGTGAATGGGAATGCGAGAATGAAAAGAAGGGTAGTGGTGCGGGGGAGTTCGGAGTCATTGGAAGAAGGAGTTGTACAGTCAAAAGTGACAAACAAAGTATACCTTGACATCAGTATTGGAAATCCAGTTGGGAAGCTTGCGGGTCGGATTGTGATTGGATTGTACGGTGATGATGTGCCCCAAACAGCAGAGAACTTCCGTGCCCTTTGTACAGGAGAGAAGGGCTTTGGATACAAGGGCTCCACCTTCCATCGCGTTATCAAGGATTTCATGATTCAAGCAGGAGATTTTGACAAAGGAAATGGGACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAGGACGAGAATTTTAATCTGTCTCATACTGGACCAGGAGTTGTTAGCATGGCAAATGCAGGCCCCAACACAAATGGGAGTCAGTTTTTCATATGCACTGTGAAGACACCATGGCTGGATCAGAGGCATGTTGTGTTTGGCCAAGTTTTGGAAGGCATGGACATTGTTAGGTTGATCGAGTCACAGGAGACAGATCGGGGTGACCGTCCTAGAAAGAAGGTGGTTATAAGTGACTCTGGTGAGCTTCCAATTGCTTGA 735 0.4639 MAAAFTLTTPTLSNVRESRIMKMGALNPNPMFRVGFPQGRVSVSVSVNGNARMKRRVVVRGSSESLEEGVVQSKVTNKVYLDISIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQAGDFDKGNGTGGKSIYGRTFKDENFNLSHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVRLIESQETDRGDRPRKKVVISDSGELPIA 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2445g00022 244 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 90 240 IPR002130 GO:0000413|GO:0003755
Gabi2445g00022 244 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 78 241 - -
Gabi2445g00022 244 FunFam Peptidyl-prolyl cis-trans isomerase 64 244 - -
Gabi2445g00022 244 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 93 237 IPR002130 GO:0000413|GO:0003755
Gabi2445g00022 244 SUPERFAMILY Cyclophilin-like 74 241 IPR029000 -
Gabi2445g00022 244 Gene3D - 66 244 IPR029000 -
Gabi2445g00022 244 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 129 141 IPR002130 GO:0000413|GO:0003755
Gabi2445g00022 244 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 100 115 IPR002130 GO:0000413|GO:0003755
Gabi2445g00022 244 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 172 187 IPR002130 GO:0000413|GO:0003755
Gabi2445g00022 244 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 200 215 IPR002130 GO:0000413|GO:0003755
Gabi2445g00022 244 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 187 199 IPR002130 GO:0000413|GO:0003755
Gabi2445g00022 244 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 124 141 IPR020892 GO:0003755|GO:0006457
Gabi2445g00022 244 MobiDBLite consensus disorder prediction 222 244 - -
Gabi2445g00022 244 CDD cyclophilin_ABH_like 78 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2445g00022 Gabi-Chr2445 161273 164573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2445g00022 94 235 U-box Gene Family AT5G67530 47.552 6.74e-34 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2445g00022 K03768 - gmx:100777088 367.851