Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2443g00011 ATGGCGGTTTCTTCTATCTCTGCAGTGTTTGTTACTCCTCTTTCACTCTCCAATCCTTCTCCTTCTCTATCATTCAAGCCAAAGTTCCCATTTTTATGCTTTCTATCCGGCAACTCCTTGAGGCTTACAACCTCAAAACCTCTGCACTCTTCAACTATGGTTTATGCTGCACCAGAAGTGCTGGATTCCCCTGAATCCGTAGACCCACCTTTAGAAACCACCCTAGATGATGATTCTGAACAAACCACCTTTCAGGTTGGTGACTTGGGGACTCCGAGCACTTCATCACTTAGCATTGGTGCGGATACAGATACTATGGCACCAAAGCAGAAAATTAGAATCAAGCTTAGATCTTACTGGGTGCCCTTGATAGAGGATTCCTGCAAGCAGATATTGGATGCAGCAAGGACTACGAATGCAAAAACGATGGGTCCTGTGCCATTACCAACTAAGAAGCGAATTTACTGTGTTCTAAAATCCCCTCATGTTCATAAGGATGCCCGTTTCCATTTCGAGATCCGAACTCATCAGCGTCTCATTGATATCTTATATCCTACAGCTCAAACAATAGATTCTCTGATGCAACTTGATCTTCCTGCTGGTGTTGATGTGGAGGTCAAGCTCTAA 627 0.4402 MAVSSISAVFVTPLSLSNPSPSLSFKPKFPFLCFLSGNSLRLTTSKPLHSSTMVYAAPEVLDSPESVDPPLETTLDDDSEQTTFQVGDLGTPSTSSLSIGADTDTMAPKQKIRIKLRSYWVPLIEDSCKQILDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2443g00011 208 Gene3D Ribosomal protein S10 domain 100 208 IPR036838 -
Gabi2443g00011 208 SUPERFAMILY Ribosomal protein S10 111 208 IPR036838 -
Gabi2443g00011 208 SMART Ribosomal_S10_2 113 207 IPR027486 -
Gabi2443g00011 208 PRINTS Ribosomal protein S10 family signature 167 181 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gabi2443g00011 208 PRINTS Ribosomal protein S10 family signature 111 124 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gabi2443g00011 208 PRINTS Ribosomal protein S10 family signature 146 161 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gabi2443g00011 208 NCBIfam 30S ribosomal protein S10 110 207 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gabi2443g00011 208 ProSitePatterns Ribosomal protein S10 signature. 135 150 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gabi2443g00011 208 Pfam Ribosomal protein S10p/S20e 113 207 IPR027486 -
Gabi2443g00011 208 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 56 208 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gabi2443g00011 208 FunFam 30S ribosomal protein S10 106 208 - -
Gabi2443g00011 208 Hamap 30S ribosomal protein S10 [rpsJ]. 109 208 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2443g00011 110 206 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 31.633 2.28e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2443g00011 K02946 - gmx:100306286 327.405