Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2443g00010 ATGACTGTAAGCAATCGCTGTTTTGTGGAATGGAAAGAGCAGTTTGTTTCGCAGGAGCGTGGCAACCGCGTTGTTCATTATTACCTGAAGGATTCTGTTGGGGAATCCATCCTTGCAGTTGTGGGCACTGAACGGAGTGTTAGACACATGTGCTATGTTGTTGCTGAGGAGTTCCTTGAAATTGTTGGGAAGGAGGGTTCCATTCCAATTGGTTTCAAATGGAGATCTAGAAGAGAGGTGGTGGATTGGCTGACATCGATGCTATCAAAGCAGCATCTGCTGGGAGATAGAAGTGTATCACCTGGTCAAAATCTGGTACAAGCCCATGAGACCACAAATGGAAGTGTCAGTGAAGTTGCTGGTCTGTCTGCACAAATAGTGGATGACAAGGACTTTCCAATGAGGAACACCAAATTATCCAACTCAGACATCGTTTGGTCGGGAGTTGCATGGACATGTGGCAAACAACTTAAGCATTATCCTGCATTTTGCAGGAATGGCATCAAAATAGCGATTCAGTCCTTTGTTTTTGTTATGGGCAAGGGAGAGAATCATTATATTGCTTATTTAGAGGATATGTATGAAGACAGGAGGGGGCAGAAAAAGGTTAAAGTGAGGTGGTTTCACCATAATCAGGAAGTCAAAGGTGCAGTTCCTGTACGAAATCCTCATCCTCGGGAAGTTTTTATCACATCTTATTCTCAAGTCATTAGTGCAGAGTGTGTTGATGGTCCTGCCACAGTCTTAACTCGGGAACACTATGAAAAATGCATGCCTTCCTTTCCACCCACTTCAACAGACAGAATACATTTGTGCTTCAGGCAATTTAAAAACAATAAAGTCAAGCCCTTTGACTTGAGTAAACTGCGTGGATACTATGCTCAACCAGTTCTTTCTTGCTTGCATCTTGATTCTGTCCAGAACCCTGAGTCTAAAGCCAATAGTTTTGCAGTAGAAGATGAAGAGTTGAGTGCAGGTAGTGATGTAAAGCTGAGAGCCAAGAGGAGCAGAAGTGATAAGGGGTGTGCTCGGTCTGGGATAGGTCGCCAGGGAGTTAGGAAGTTAATTAGAAGTAAGCAAATGATGGATTACAAAAGCCTCCAGGTTGAATGTCAACCTTGGTGTAACCCCATGTACAAAGTTAATGACAAGATAGAGTTGCTCTGTCAAGATAGTGGCATTAGAGGCTGTTGGTTCAGGTGTACAGTTGTGCAGGTATCTCGGAAACATTTGAAAGTTCAGTATGATGATGTTCAGGACGAAGATGGTAGTGGAAATCTTGAGGAATGGGTCCCTGCTTTCAAGTTGGCCATGCCTGATAAACTTGGGATGAGACATTCTGGCCGGCCCACCATCAGGCCAGCTCCAACTTATGAGGAGCAAGAATTGGCTGTTGAGGTTGGAACTGCAGTTGATGCATGGTGGAGTGATGGCTGGTGGGAGGGGGTTGTAATTAGAATTGACAACTGCGGCGATGATAGTGTTCAAGTCTACTTCCCTGGTGAATGCTTGCTGATGAAAGTGCACAAGAAGGATTTAAGAATATCTAAGGATTGGTTAGGGGACAGGTGGATTAACAGTAAGTCAAAGCCTGATATAACCTCAAGTATATTCACAGCTAATAGCTTTAACACAAAGCTTTCCATGTCCCTATCTATATCTAAAGATGGGAACACTGTTGGTTTTGCTAATTCATGTCATGAAGGTCCTGTTAGTGAGAAGTCTAATGAACCTGATATTGTTGAAGAGAAATTTGTGTGTTGTGATGACTTTACTGAAGATGGGGACTGTGTCCATGATAATAAACCCCCTTCAGAAAAAGGTACCCAAGTTGATAATATTGAGATACATGGCAGTTGTGATAATGAAGATAATGGTGATGATAATGATAAGGACAGCAATGATGATGGTGTTAGCAAGAATGGTGATAATGATAATATGGATATGGAGATCTGTGGGACTTCTGGACCGGACTCTAAAGTTGTAGAACTCATGGAAGTGGCTTCATAA 2010 0.4279 MTVSNRCFVEWKEQFVSQERGNRVVHYYLKDSVGESILAVVGTERSVRHMCYVVAEEFLEIVGKEGSIPIGFKWRSRREVVDWLTSMLSKQHLLGDRSVSPGQNLVQAHETTNGSVSEVAGLSAQIVDDKDFPMRNTKLSNSDIVWSGVAWTCGKQLKHYPAFCRNGIKIAIQSFVFVMGKGENHYIAYLEDMYEDRRGQKKVKVRWFHHNQEVKGAVPVRNPHPREVFITSYSQVISAECVDGPATVLTREHYEKCMPSFPPTSTDRIHLCFRQFKNNKVKPFDLSKLRGYYAQPVLSCLHLDSVQNPESKANSFAVEDEELSAGSDVKLRAKRSRSDKGCARSGIGRQGVRKLIRSKQMMDYKSLQVECQPWCNPMYKVNDKIELLCQDSGIRGCWFRCTVVQVSRKHLKVQYDDVQDEDGSGNLEEWVPAFKLAMPDKLGMRHSGRPTIRPAPTYEEQELAVEVGTAVDAWWSDGWWEGVVIRIDNCGDDSVQVYFPGECLLMKVHKKDLRISKDWLGDRWINSKSKPDITSSIFTANSFNTKLSMSLSISKDGNTVGFANSCHEGPVSEKSNEPDIVEEKFVCCDDFTEDGDCVHDNKPPSEKGTQVDNIEIHGSCDNEDNGDDNDKDSNDDGVSKNGDNDNMDMEICGTSGPDSKVVELMEVAS 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2443g00010 669 ProSiteProfiles BAH domain profile. 168 287 IPR001025 GO:0003682
Gabi2443g00010 669 Pfam BAH domain 171 279 IPR001025 GO:0003682
Gabi2443g00010 669 CDD Tudor_Agenet_AtDUF_rpt1_3 379 456 - -
Gabi2443g00010 669 Gene3D - 135 295 IPR043151 -
Gabi2443g00010 669 SMART agenet_At_2 463 521 IPR014002 -
Gabi2443g00010 669 SMART agenet_At_2 377 443 IPR014002 -
Gabi2443g00010 669 MobiDBLite consensus disorder prediction 598 669 - -
Gabi2443g00010 669 CDD BAH_plant_1 163 292 - -
Gabi2443g00010 669 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 377 583 - -
Gabi2443g00010 669 SMART BAH_4 168 287 IPR001025 GO:0003682
Gabi2443g00010 669 Pfam Agenet domain 382 456 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2443g00010 Gabi-Chr2443 164672 170468 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2443g00010 391 519 PHD Transcription Factor Family AT5G58610 30.827 2.89e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2443g00010 - - gmx:100809407 1065.06