Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2439g00030 ATGAACGGGAAAGCATCCGTCTCTAAGGAACTCATTGCCAAGCACAACAAGATCTTAGAGGGGCTTCTTAAGCTTCCTGTAAACAGGGAATGTGCAGACTGCCGGAACAAGGCACCACGATGGGCAAGTGTGAACCTAGGGATTTTCATTTGCATGCAATGTTCAGGGATTCACCGGAGTCTCGGAGTGCATATATCGAAGGTGCGATCAACAACTTTGGATACATGGTTGCCAGATCAAGTTTCTTTTATGCAATTCACAGGTAATGAGAAGTCAAATAAGCACTGGGAGGCAGAACTGCCGCCAAATTTTGACAGAAGTAGATTGGGAATTGAGAAGTTTATTCGTGCCAAGTATGTGGAGAAAAGATGGGCTTCCAAAGTTGGAGTACAATCAACTTCAAAGTCGGCTGAAATGATCTGCAACTTTAATGAGTCACCAGATGGTGGGGTTAGGAGTGATATTCCAAAGAACAGTAGGAGACTTTCTCTTGAAGAAAGCATTCTTGCGAACCACATGGCACAAATTCTGCCCCCAGTAACAAGATCTCCTGTGGGTTCTATGGACATGCAAAAGAAGTGTTCACCTCCATTAAAGAGGCCATCCTCATCAGTTGATTTTGACAAGTCCACAGGAAAGAGTCATGGTACTTCTGACTTTTTCAGCCTACTTTGCATCCATGACGATAAACAGAACTTCTCAACTGTACCTCCTTCAAGCTGGGCAACATTTGATTGA 738 0.439 MNGKASVSKELIAKHNKILEGLLKLPVNRECADCRNKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQFTGNEKSNKHWEAELPPNFDRSRLGIEKFIRAKYVEKRWASKVGVQSTSKSAEMICNFNESPDGGVRSDIPKNSRRLSLEESILANHMAQILPPVTRSPVGSMDMQKKCSPPLKRPSSSVDFDKSTGKSHGTSDFFSLLCIHDDKQNFSTVPPSSWATFD 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2439g00030 245 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 135 IPR001164 GO:0005096
Gabi2439g00030 245 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 245 IPR044520 GO:0005096
Gabi2439g00030 245 SMART arf_gap_3 5 132 IPR001164 GO:0005096
Gabi2439g00030 245 MobiDBLite consensus disorder prediction 182 215 - -
Gabi2439g00030 245 CDD ArfGap 19 119 - -
Gabi2439g00030 245 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
Gabi2439g00030 245 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Gabi2439g00030 245 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Gabi2439g00030 245 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Gabi2439g00030 245 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Gabi2439g00030 245 FunFam stromal membrane-associated protein 1 isoform X1 1 129 - -
Gabi2439g00030 245 SUPERFAMILY ArfGap/RecO-like zinc finger 15 126 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2439g00030 Gabi-Chr2439 299662 324287 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2439g00030 22 119 C2H2 Transcription Factor Family AT4G05330 50.000 1.41e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2439g00030 K12486 - gmx:100803735 417.157