Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2439g00016 ATGGAGTATGGCAGTGGGTCCCAATCCCCAGGGGAGCATGATGGTTCCGATTCCGGGAGGAGGAGGAAGCGCTACCATCGTCATACTGCCAACCAGATTCAGAGGCTTGAGTCAATGTTCAAGGAGTGCCCCCATCCAGATGAGAAGCAGAGGTTGCAGTTAAGCAGGGAATTGGGTCTGGCCCCGAGGCAGATCAAATTTTGGTTCCAGAACAGGAGGACTCAGATGAAGGCCCAGCACGAAAGAGCTGATAACTCTGCACTTCGAGCAGACAATGACAAGATACGTTGCGAGAACATAGCCATCAGGGATGCCTTAAAAAATGCTATCTGCCCTTCTTGTGGTGTCCCTCCTATCAGTCAGGACTCTTATTTTGATGACCAAAAGTTGCGCTTGGAGAATGCCCACCTCAAGGAAGAGCTTGATAGAGTATCTAGCATTGCCTCCAAGTATATTGGAAGACCAGTTTCCCAACTTCCTCCGGTTCAGCCTTTTCATATATCGTCTCTCGACTTGTCTATGGGGAGTTTTGGTAGCCAAGGGATGATTGGTCCTTCCCTTAATCTTGATCTTCTCCCAGGGAGTTCTTCATCTCTGCCAAATTTGCCTTATCAACCTCCTTGCCTTTCAGACATGGACAAGTCTCTAATGCCAGACATTGCTTCCAATGCCATGCAAGAATTACTCAGGCTCTTGCGGACAAATGAACCCTTGTGGATCAAGTCAAGCACTGATGGCAGAGATACTCTTAATTTTGATACCTATGAAAGAATGTTCCCCAAGCCCAATAGTCGCCCAAAGAATCCTAACGTTCGCGTTGAAGCATCCAGAGATTCACGACTTGTAATCATGAATAGCTTAACTTTAGCTGACATGTTTATGGACCCAAACAAGTGGATGGAGCTTTTTCCCACTATTGTCTCAGTGGCAAGAACTATTCAAGTTATATCTCCTGGGATAATGGGTGGTTGCAATGGTTCTTTGCAGTTGATGTATGAAGAGTTGCAAGTGCTTTCTCCGCTTGTTTCTACTCGAGAGTTCTACTTCCTGCGTTACTGTCAGCAAATCGAGCAAGGCACATGGGCAGTGGTAGATGTTTCTTACGATTTTCCCCAAGATAATCACTTTGCTCCTCAGTTTCGGTCTCATCGTCGTCCTTCTGGTTGCTTGATCCAGGACATGCCTAATGGGCATTCCCAGATAACTTGGGTTGAACACGTAGAGATTGAAGATAAAACTATAGTGCATCGACTTTATAGAAATCTTATTTATAGTGGGTTGGCATTCGGAGCTGAAAAATGGCTTGTTACTCTTCAGAGGATGTGTGAAAGACTTGCTTGTCTAACGGTGACAGGCAATCCTAGCCCGGATCTTGGAGGAGTAATTTCATCTCCTGAGGGCAAGAGGAGCATGATGAAACTTGCTCAAAGGATGGTCACCAATTTCTGTGCCAGCATTAGCACTTCATCTGGCCATAGATGGACCACGCTCTCTGGGTTGAACGAGATTGGAGTCAGAGTCACAGTCCATAAGAGCATAGATCCTGGGCAACCTAATGGCGTGGTGCTAAGTGCAGCCACTACCATTTGGCTCCCCGTCCCTCCCCACACTGTGTTCAATTTCTTCAAGGATGAAAGAAAAAGACCTCAGTGGGATGTTCTTTCCAACGGTAATGCTGTGCATGAGATTGCCCACATTGCAAATGGTTCACACCCTGGTAACAGCATATCAGTTCTTCGAGCTTTCAACACCAGTCAGAACAACATGTTAATACTCCAAGAGAGCTGCATAGATTCCTCAGGTTCACTTGTGGTTTATTGCCCAGTTGATCTGCCATCCATAAACATAGCAATGAGTGGCGAAGACCCTTCATACATTCCCCTACTACCATCTGGATTTACCATTTCGCCTGATGGGCAGCATGACCAGGAAGGAGATGGAGCATCAACCAGCTCAAACACAAACAGGAGCATAGGGGGTTCACTAATTACAGTTGCATTCCAGATTCTAGTGAGCAGCTTGCCATCTGCCAAGCTTAACATGGAGTCGGTCACAACCGTTAATAATCTCATTGGCTCCACTGTCCACCAAATAAAGGCTTCCTTGAATTGTCCTAATTCCTGA 2124 0.4623 MEYGSGSQSPGEHDGSDSGRRRKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRADNDKIRCENIAIRDALKNAICPSCGVPPISQDSYFDDQKLRLENAHLKEELDRVSSIASKYIGRPVSQLPPVQPFHISSLDLSMGSFGSQGMIGPSLNLDLLPGSSSSLPNLPYQPPCLSDMDKSLMPDIASNAMQELLRLLRTNEPLWIKSSTDGRDTLNFDTYERMFPKPNSRPKNPNVRVEASRDSRLVIMNSLTLADMFMDPNKWMELFPTIVSVARTIQVISPGIMGGCNGSLQLMYEELQVLSPLVSTREFYFLRYCQQIEQGTWAVVDVSYDFPQDNHFAPQFRSHRRPSGCLIQDMPNGHSQITWVEHVEIEDKTIVHRLYRNLIYSGLAFGAEKWLVTLQRMCERLACLTVTGNPSPDLGGVISSPEGKRSMMKLAQRMVTNFCASISTSSGHRWTTLSGLNEIGVRVTVHKSIDPGQPNGVVLSAATTIWLPVPPHTVFNFFKDERKRPQWDVLSNGNAVHEIAHIANGSHPGNSISVLRAFNTSQNNMLILQESCIDSSGSLVVYCPVDLPSINIAMSGEDPSYIPLLPSGFTISPDGQHDQEGDGASTSSNTNRSIGGSLITVAFQILVSSLPSAKLNMESVTTVNNLIGSTVHQIKASLNCPNS 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2439g00016 707 Gene3D - 9 95 - -
Gabi2439g00016 707 CDD homeodomain 21 80 IPR001356 GO:0003677
Gabi2439g00016 707 SUPERFAMILY Bet v1-like 464 699 - -
Gabi2439g00016 707 ProSiteProfiles START domain profile. 210 447 IPR002913 GO:0008289
Gabi2439g00016 707 SMART HOX_1 20 83 IPR001356 GO:0003677
Gabi2439g00016 707 SUPERFAMILY Bet v1-like 211 445 - -
Gabi2439g00016 707 MobiDBLite consensus disorder prediction 636 655 - -
Gabi2439g00016 707 MobiDBLite consensus disorder prediction 1 27 - -
Gabi2439g00016 707 FunFam Homeobox-leucine zipper protein GLABRA 2 219 443 - -
Gabi2439g00016 707 SUPERFAMILY Homeodomain-like 6 79 IPR009057 -
Gabi2439g00016 707 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 20 703 IPR042160 -
Gabi2439g00016 707 Pfam Homeodomain 22 77 IPR001356 GO:0003677
Gabi2439g00016 707 ProSitePatterns 'Homeobox' domain signature. 54 77 IPR017970 GO:0000981|GO:0006355
Gabi2439g00016 707 SMART START_1 219 444 IPR002913 GO:0008289
Gabi2439g00016 707 CDD START_ArGLABRA2_like 214 443 - -
Gabi2439g00016 707 ProSiteProfiles 'Homeobox' domain profile. 19 79 IPR001356 GO:0003677
Gabi2439g00016 707 Pfam START domain 220 444 IPR002913 GO:0008289
Gabi2439g00016 707 Gene3D - 218 444 IPR023393 -
Gabi2439g00016 707 FunFam Homeobox-leucine zipper protein HDG1 9 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2439g00016 Gabi-Chr2439 208400 211365 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2439g00016 17 707 Homeobox Transcription Factor Family AT1G73360 66.381 0.0 938
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi2439g00016 START 2.2e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2439g00016 K09338 - gmx:100796042 1216.45