Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2439g00012 ATGTGCAGTAGAGGCCATTGGAGGCCAGCAGAGGATGATAAACTTCGGGAGTTGGTGGAACACTACGGACCTCATAATTGGAACGCTATAGCTGACAAACTCCGAGGAAGATCAGGGAAGAGCTGCAGGTTGAGATGGTTCAATCAATTGGACCCAAGAATAAATAGAGGTCCTTTCACAGAGGAAGAAGAAGATCGTCTTGTAGCATCTCACAGAATTCATGGTAACAGATGGGCTGTTATTGCAAGACTTTTCCCCGGAAGGACTGACAACGCTGTCAAGAATCACTGGCATGTGATGATGGCAAGGATTCGTCGAGAAAGATCTAAACTTTATGCTAAACAGCCTCCTCATCAAAGAATTTTTGACGATGAGACACGAATCCTCCCTTCTTTTGTAGACAAGTATAGCAACACTAGTGTCACATATACCCCTTTTCAATTTCCCAATAACTTTCACTTTCAAGATCCAAGTTCTTGCTCTACCATGCTTCAAGATAGAAGTCAATCGGTTGAGTTCTATGATTTTCTTCAAGTAAATACTGATTCCAATAAAAGCGAAGTAACGGACAATTATCCCAGAAGAGATGATGAGGAAGTAAATCAAGATACTGTGGGGACGCAGAGCAGGGATGGCGTTCCATTCATTGATTTTTTGTTTGTTGGAAGCTCTTAA 675 0.4207 MCSRGHWRPAEDDKLRELVEHYGPHNWNAIADKLRGRSGKSCRLRWFNQLDPRINRGPFTEEEEDRLVASHRIHGNRWAVIARLFPGRTDNAVKNHWHVMMARIRRERSKLYAKQPPHQRIFDDETRILPSFVDKYSNTSVTYTPFQFPNNFHFQDPSSCSTMLQDRSQSVEFYDFLQVNTDSNKSEVTDNYPRRDDEEVNQDTVGTQSRDGVPFIDFLFVGSS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2439g00012 224 MobiDBLite consensus disorder prediction 184 209 - -
Gabi2439g00012 224 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Gabi2439g00012 224 FunFam MYB transcription factor 4 55 - -
Gabi2439g00012 224 Gene3D - 58 137 - -
Gabi2439g00012 224 PANTHER MYB PROTEIN-RELATED 4 176 - -
Gabi2439g00012 224 MobiDBLite consensus disorder prediction 188 204 - -
Gabi2439g00012 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Gabi2439g00012 224 Gene3D - 4 55 - -
Gabi2439g00012 224 CDD SANT 7 48 IPR001005 -
Gabi2439g00012 224 CDD SANT 58 101 IPR001005 -
Gabi2439g00012 224 SMART sant 3 52 IPR001005 -
Gabi2439g00012 224 SMART sant 55 103 IPR001005 -
Gabi2439g00012 224 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Gabi2439g00012 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Gabi2439g00012 224 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Gabi2439g00012 224 Pfam Myb-like DNA-binding domain 7 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2439g00012 Gabi-Chr2439 119635 121144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2439g00012 1 224 MYB Transcription Factor Family AT1G17950 55.738 1.03e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2439g00012 Myb_DNA-bind_6 4.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2439g00012 K09422 - qsa:O6P43_005257 345.51