Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2439g00010 ATGGCCGGCACAAACTCAGTTGATGTCATTTTGGATTTTCTCAAGAGGAATCGATTCACAAGAGCCGAGGCAGCTTTGCGCAGTGAGATCAATAACCATCCCGACTTAAATGGCTTCCTTCAGAAGCTTACATTGGAAGAAAAGGCCTCCTGCGATGTACCACAGAATAATAAGGGGAAGCTGGTGCTAGAGATTCAAGGGCCGGATTCTCATGATAGTGTTGAAGTTTCTAAAGAATTGATTGTGAAGGAAATAGAGTGTGGGACTTGTCGAAATTCCATGGAAAGCAAATGGAAAACTGCTGCTCCTTCAACGGTGGGTCGTAATAAATCAGATGAAGTGGCTGGGACAAGTGAAAAAAATCTCACTTTCTCTAAGCGTTCGGAGGACAGTATGCTTGATTTATACTCATGGAAGCTCATTCCCAGCAATGGTCCTGTGGAGCCTTACCAAAATGATGGTGGCACCAACACCAATTCAATGTCTGCGGAGGAAAATGCTGTGCTTGCTGATAAAAAATCCTCGTGGCTTGGAAGTAGTAGTAAAGCCTATGTGGATCCAAAGTATGACCTTGTGCAAAGCAGAGAAACTAGGGAACTTGATCGGCAGCTTAAATTTAATAGTTCATATCTTAAAGGCAACTTTGCAGATAATCCGTGGTCAAGAACTGATGAGAATGCAAATTCGTCTTCAGACTCCTGCAAAGATTGTTCTGTCAAGACTATCTTCCCCTTCCCGAAGAGGGATATGTCTTCGAGCTTTGATGGTGCAACTTATTCTGACAAAAAAGAGGAAAAAAGAAGGGTAGAAATTAGTGATATTAGGGAACCTAAAAAAGAGCAGGTGGATGAATTTGGGAGAGCTATTTACTTGGGCAAGTCACAAGGCAGTTCTGAACAGAAGTTGATTGGCAGCATAAGTTTTCCTCTTGTGCCTGAAAATCAGAAAGAAGAGTTTCCTAGGCTTCCTCCAGTTAAACTCAAGTCAGAAGATAAGCCCTTGGTTGTTCATTGGGAAGAGAAGTTCGAACGGGATGGACCAACTTCAAAACTCACTGGTCCTGACAGCACTTTGCTTATCGGTTCATATCTGGATGTACCTATTGGACAAGAAATTAACCCTTCAGGCATGAGGAGGGCTGCGGGGGGCAGTTGGTTATCTGTAAGTCAAGGTATAACAGAGGATACATCTGATCTTGTATCAGGTTTTGCAACAGTTGGTGATGGGTTGAGTGAATCTGTTGACTATCCAAATGAATATTGGGACTCCGATGAATATGATGATGATGATGATGTTGGGTACATGAGACAACCTATTGAGGATGAGGCGTGGTTTTTGGCGCATGAAATTGATTACCCTAGTGACAATGAAAAGGGGACTGTACATGGAAGTGTTCCAGATCCTCAGGAAAGAGGTCCAGCCAAAGATGAGGATGATGATCAATCTTTTGCTGAGGAGGATTCGTACTTCTCTGGTGAGCGATATCTTCAAGCAAATAATGTTGAACAAGTCACAACTTCTGATGATCCTATTGGTCTAACGGTTACTGAAATGTATGGAATGACTAATGATAATGATTTAATGGCTCAATATGATGGACAATTGATGGATGAAGAAGAACTGAACCTTTCACATGCAGAATCTGTCTGGCAGGGCTTTGTCCCTCAGGCAAATGAAGTCATCATGCTAGGAGATGGGAAGGTTTTGAATGATAGTGTAAGATCACGACTAGAGGATATCTGTATGGACGATGAACAACATGGTTCAGTTAGGTCAATTGGGGTGGGAATCAACAGTGATGCTGCTGATATTGGTAGCGAAGTGCGTGAAAGTTTGGTTGGTGGTAGTAGTGAAGGGGATTTAGAATATTTCCGTGATCGTGATGTTGGGCTTGGTGGTTTGAGACACTCTCATCATGATGTGGATAAGAATTCTATTAAAAAATCAAACAAAAATAAGAAGAAAAATGATAAGAGTGAGTCAAATAAATATGTGATAGGAGGTGATAGGGATGCACCGTTGAAGATGAAAACTCATAGTGATGGTAACTTCTCTTTTCCCCTCTCTTTGAGGGATGGCCAGATGATTCAGGCTGCCTCCAGTAAGTCCCAGTGGTCAAATAACTGCAATGCAGATGAAACTGATGATTGTCTTAATGCATTTGTGGGATCTGATGAAATGGTTGCTTCATGGAGGCAGAAGAGCAGTGATTCTTCACCCGTTAAAAGTTCTAGGGACGAGAATAATGCTAACACAATAAAATCCATAGACTCTTCTCCAACAACAGTCTCAAATTATGGATATTCTGAAAGAGATCATGTCAAGCTAGAAGAGGATGACAAGGTTGGAGATGCAAGGGAAGATGATCTAGGGGCATCGCTAGAAGATGAGGAGGCTGCTGCTGTGCTAGAGCAAGTAAGGCAAATAAAGGCCCAGGAGGAGGAATTCGAAACCTTCAATCTAAAGATTGTGCACAGGAAAAATAGAACTGGCTTTGAGGAGGACAAGAATTTCCATGTTGTTTTAAATTCCGTAATAGCTGGAAGGTATCATGTCACTGAGTATCTGGGATCTGCTGCATTTAGCAAAGCTATACAAGCTCATGATCTGCACACAGGCATGGATGTTTGTGTTAAAATTATAAAGAACAACAAGGACTTCTTTGACCAAAGCCTGGATGAGATCAAGCTTCTCAAGTATGTCAATAAGCATGATCCTGGAGACAAGTATCACATTCTTCGGTTATATGATTATTTCTATTATCGAGAACATTTGTTAATAGTATGTGAACTACTTAAAGCAAACTTATATGAGTTTCATAAATTTAATAGAGAATCAGGGGGTGAGGTGTACTTCACAATGCCAAGATTGCAGTCTATTACCATTCAGTGTTTGGAAGCACTTCAGTTTTTGCACAGCCTTGGACTAATACATTGCGACTTGAAGCCAGAGAATATTTTGGTTAAAAGCTATAGCAGATGTGAGGTGAAGGTCATTGATCTTGGAAGTAGTTGTTTTGAGACAGATCACCTTTGCTCTTATGTTCAGTCAAGGTCCTATCGTGCTCCTGAGGTTATTTTCGGACTTCCATATGACAAGCAGATTGATATCTGGTCACTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATGTTCTCTTCCAAAATGATTCACCTGCAACATTACTTGCTCGGGTGATTGGGATCATTGGTCCAATTGATCAAAGTATGCTTGCAAAAGGACGGGACACATATAAATACTTCACCAAAAATCATATGCTTTATGAACGGAATCAGGAAACCAACAGGTTAGAATACTTGATTCCGAAAAAGACATCCTTGAGGCATAGATTGCCAATGGGAGACCAAGGCTTCATTGACTTTGTTGCTCATTTGCTTGAGATCAACCCTAAGAAGCGGCCTTCTGCATCTGAGGCCCTGAAGCACCCATGGTTATCATATCCTTATGAACCCATATCATCTTGA 3486 0.4139 MAGTNSVDVILDFLKRNRFTRAEAALRSEINNHPDLNGFLQKLTLEEKASCDVPQNNKGKLVLEIQGPDSHDSVEVSKELIVKEIECGTCRNSMESKWKTAAPSTVGRNKSDEVAGTSEKNLTFSKRSEDSMLDLYSWKLIPSNGPVEPYQNDGGTNTNSMSAEENAVLADKKSSWLGSSSKAYVDPKYDLVQSRETRELDRQLKFNSSYLKGNFADNPWSRTDENANSSSDSCKDCSVKTIFPFPKRDMSSSFDGATYSDKKEEKRRVEISDIREPKKEQVDEFGRAIYLGKSQGSSEQKLIGSISFPLVPENQKEEFPRLPPVKLKSEDKPLVVHWEEKFERDGPTSKLTGPDSTLLIGSYLDVPIGQEINPSGMRRAAGGSWLSVSQGITEDTSDLVSGFATVGDGLSESVDYPNEYWDSDEYDDDDDVGYMRQPIEDEAWFLAHEIDYPSDNEKGTVHGSVPDPQERGPAKDEDDDQSFAEEDSYFSGERYLQANNVEQVTTSDDPIGLTVTEMYGMTNDNDLMAQYDGQLMDEEELNLSHAESVWQGFVPQANEVIMLGDGKVLNDSVRSRLEDICMDDEQHGSVRSIGVGINSDAADIGSEVRESLVGGSSEGDLEYFRDRDVGLGGLRHSHHDVDKNSIKKSNKNKKKNDKSESNKYVIGGDRDAPLKMKTHSDGNFSFPLSLRDGQMIQAASSKSQWSNNCNADETDDCLNAFVGSDEMVASWRQKSSDSSPVKSSRDENNANTIKSIDSSPTTVSNYGYSERDHVKLEEDDKVGDAREDDLGASLEDEEAAAVLEQVRQIKAQEEEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPGDKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHSLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVIFGLPYDKQIDIWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGPIDQSMLAKGRDTYKYFTKNHMLYERNQETNRLEYLIPKKTSLRHRLPMGDQGFIDFVAHLLEINPKKRPSASEALKHPWLSYPYEPISS 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2439g00010 1161 MobiDBLite consensus disorder prediction 731 783 - -
Gabi2439g00010 1161 MobiDBLite consensus disorder prediction 731 768 - -
Gabi2439g00010 1161 SUPERFAMILY Protein kinase-like (PK-like) 839 1154 IPR011009 -
Gabi2439g00010 1161 MobiDBLite consensus disorder prediction 634 677 - -
Gabi2439g00010 1161 MobiDBLite consensus disorder prediction 455 485 - -
Gabi2439g00010 1161 SMART serkin_6 850 1152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2439g00010 1161 Gene3D Phosphorylase Kinase; domain 1 844 931 - -
Gabi2439g00010 1161 PANTHER DUAL SPECIFICITY PROTEIN KINASE 384 1152 - -
Gabi2439g00010 1161 CDD PKc_DYRK_like 850 1152 - -
Gabi2439g00010 1161 FunFam Serine/threonine-protein kinase ppk15 929 1153 - -
Gabi2439g00010 1161 FunFam Putative serine/threonine-protein kinase dyrk2 844 931 - -
Gabi2439g00010 1161 Pfam Protein kinase domain 850 1152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2439g00010 1161 ProSitePatterns Serine/Threonine protein kinases active-site signature. 976 988 IPR008271 GO:0004672|GO:0006468
Gabi2439g00010 1161 Gene3D Transferase(Phosphotransferase) domain 1 904 1152 - -
Gabi2439g00010 1161 ProSiteProfiles Protein kinase domain profile. 850 1152 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2439g00010 Gabi-Chr2439 98411 109608 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2439g00010 849 1147 MAP Kinase Gene Family AT5G19010 31.661 1.69e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Gabi2439g00010 Pkinase 4.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2439g00010 - - cave:132185888 1823.14