Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2439g00005 ATGTTAGCTAATAGCTTATCTCCCTCGTCAGTTCCCACTTCGGAGCCGTTTTCCTGCACTGAGAATACTAATAAAAGGAAGAGAAGGCCTGCAGGAACACCAGATCCAGATGCAGAAGTGGTGACCCTCTCACCCAAGACCTTGCTCGAATCAGATCGTTATGTTTGTGAGATCTGCAACCAGGGATTCCAGAGGGATCAGAACCTTCAGATGCACCGGCGGCGTCACAAGGTGCCGTGGAAGCTATTGAAGAGAGAGACGCCGGCGGTGAGCAAGAGAGTATTTGTTTGCCCGGAGGCAAGCTGTTTGCACCACGATCCATGCCATGCCCTGGGTGATCTTGTTGGGATAAAGAAGCATTTCAGGAGGAAACACAGCAATCACAAGCAGTGGGTCTGCCAGAGATGCTCTAAGGGCTATGCGGTGCAGTCCGATTACAAAGCACATCTCAAAACCTGTGGCACCAGAGGCCACACTTGCGATTGTGGACGCGTTTTCTCAAGGGTGGAGAGCTTTATTGAGCACCAAGATGCGTGCAACATGGGGATGCTACGGCCAGAATCGCAGGCGGCAGCTGCATGCTGCTTGTCGCGAACAGCTTCAAGCCTGAGCCCTTCAAGCGAAACAGGTCCTTGGCCAGCCAATCTAGTAATACCAAAGCCCATAACAGTTACAGAACCCACATTCATGAACCCTACTACCACTGCTGATAAACTCTACCCAAATTTGGAGCTTAAGCTCTCCACAACTACAACCACTGTATCCAATCCTATTGATGTGGTTTCTGCATCTCTATCACCTAAGCTGCATCTATGGATGGTGTCATCGGAAATGAACAACAAAAATGTGAACTCATCATCACCGAAGGAGAGCAGCAACAGCGGCGGTGCAGGTTCGGCGGCGATGAGGCTCCAAGAGCAGGCACGTGAGCAGTTGAGGATAGCCGTGGCGGAGAAGGCATATGCGGAGGAGGCAAGGAAACAAGCCAAGAGGCAGATTGAAGTGGCGGAGCTTGATTTCACCAACGCCAAGAGGATTAGACAACAAGCGCAAGCTGAACTTGACAAGGCTTATGGCTTTAAGGAGCATGCAATCAAACAGATAAATTCAACAATGCTTCAAATCACTTGCCATGCTTGCAAGCATCAATTTCAATCTGTGGCCGCTCCCCCACCCCCGGACGAGAACTCTTTGGTATTAAGCTACATGTCCTCTGCAATAACAACAGATCGAAGCTGGAGAAATAGAGAAGCATCATCCCTAAACCGCTAA 1272 0.4992 MLANSLSPSSVPTSEPFSCTENTNKRKRRPAGTPDPDAEVVTLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPAVSKRVFVCPEASCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCQRCSKGYAVQSDYKAHLKTCGTRGHTCDCGRVFSRVESFIEHQDACNMGMLRPESQAAAACCLSRTASSLSPSSETGPWPANLVIPKPITVTEPTFMNPTTTADKLYPNLELKLSTTTTTVSNPIDVVSASLSPKLHLWMVSSEMNNKNVNSSSPKESSNSGGAGSAAMRLQEQAREQLRIAVAEKAYAEEARKQAKRQIEVAELDFTNAKRIRQQAQAELDKAYGFKEHAIKQINSTMLQITCHACKHQFQSVAAPPPPDENSLVLSYMSSAITTDRSWRNREASSLNR 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2439g00005 423 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Gabi2439g00005 423 MobiDBLite consensus disorder prediction 1 20 - -
Gabi2439g00005 423 CDD ATP-synt_Fo_b 301 368 - -
Gabi2439g00005 423 Gene3D Classic Zinc Finger 116 193 - -
Gabi2439g00005 423 MobiDBLite consensus disorder prediction 280 300 - -
Gabi2439g00005 423 MobiDBLite consensus disorder prediction 280 303 - -
Gabi2439g00005 423 Coils Coil 319 353 - -
Gabi2439g00005 423 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 76 IPR013087 -
Gabi2439g00005 423 MobiDBLite consensus disorder prediction 1 38 - -
Gabi2439g00005 423 SMART c2h2final6 131 158 IPR013087 -
Gabi2439g00005 423 SMART c2h2final6 54 76 IPR013087 -
Gabi2439g00005 423 SMART c2h2final6 95 125 IPR013087 -
Gabi2439g00005 423 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 368 IPR031140 -
Gabi2439g00005 423 SUPERFAMILY beta-beta-alpha zinc fingers 51 77 IPR036236 -
Gabi2439g00005 423 Gene3D Classic Zinc Finger 31 95 - -
Gabi2439g00005 423 FunFam protein indeterminate-domain 12-like 33 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2439g00005 Gabi-Chr2439 46632 49333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2439g00005 23 408 C2H2 Transcription Factor Family AT2G01940 56.436 7.20e-143 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2439g00005 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2439g00005 K25871 - gmx:100800187 593.578